Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P16
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    29   0.50 
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    28   0.66 
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    28   0.87 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   6.1  
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch...    25   8.1  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   8.1  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    25   8.1  
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    25   8.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.1  

>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -3

Query: 274 AGCEIKCSKANRGRRSKRGPHVMSCMSRGTGGGRSGDMALSSGMREKVEEKDRRR 110
           AG E    KAN+ R+  +GP+ +S   R +    + +  L   +   V E+ + R
Sbjct: 202 AGTEDSAPKANKKRKGPKGPNPLSIKKRSSKNHTTDEPTLPVNIIGDVGERKKHR 256


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 69  PRKRCSHQPPPFTALRRSFSSTFSLIPEERAISPERPPPVPRLIQ 203
           PR+R +  PP   A  RS S+  +L P   A     PPP P  +Q
Sbjct: 2   PRRRSAAPPPRRAAPARSASTAAALPPRTMA-----PPPAPSRVQ 41


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -1

Query: 345 RISRI*TAMRLSRESVARLKSVS 277
           RISR+ + +R  RESV+ LK+VS
Sbjct: 453 RISRVFSVLREERESVSELKNVS 475


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 422 NGAGLIIPLQTDST-ANRLNNTQGALHAFPEYEQR 321
           +G+  ++P +   T    LNN   A+HA+ E EQ+
Sbjct: 746 SGSNEVLPFRFSPTMCILLNNIHFAMHAYEELEQK 780


>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 333

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 422 NGAGLIIPLQTDSTANRLNNTQGALHAFPEYEQ 324
           NG G+IIP+   +T  R  +   AL      EQ
Sbjct: 273 NGKGMIIPIPGSTTVQRAESNLSALKKSLSSEQ 305


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 276 WKQ-ILVVLPTLWIAASLFIFW 338
           W Q IL  +P  W+  ++F+ W
Sbjct: 103 WSQLILYYVPVYWLLKAIFLIW 124


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 24  EYSRLARSNTELVFSPRKRCSHQPPPFTALRRSFSST 134
           E + +    ++ + SPR+R      P T LRRSFS +
Sbjct: 227 EQNEILHVISDTLSSPRRRNPLLSSPKTPLRRSFSKS 263


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +3

Query: 138 SLIPEERAISPERPPPVPRLIQLITWGPRXXXXXXXXXXXXISHPAWKQ 284
           S +P+   I P  PPPVP     +++  +             S  +WKQ
Sbjct: 207 STLPKISPIPPSNPPPVPS----VSYSQKQQKQLKPKAALEASQNSWKQ 251


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 93   PPPFTALRRSFSSTFSLIPEERAISPERPPPVP 191
            P P TA      ++   +P+  + +P  PPPVP
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,696
Number of Sequences: 5004
Number of extensions: 35579
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)