Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P16
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54164| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.29 
SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)                 28   4.7  
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_38680| Best HMM Match : DUF951 (HMM E-Value=7.3)                    27   6.3  
SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.3  
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_54164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = +3

Query: 12  ACAPEYSRLARSNTELVFSPRKRCSHQPPPFTALRRSFSSTFSLIPEE 155
           AC PEY  L RS     F    R S++  P  A  RS SST + +PEE
Sbjct: 8   ACLPEYDTLRRS-----FLSLSRTSNKRGPQAAGMRSRSSTTTALPEE 50


>SB_32385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1322

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +3

Query: 51  TELVFSPRKRCSHQPPPFTALRRSFSSTFSLIPEERAISPERPPP 185
           TE    P K       P TAL+    S   L+P E +   E P P
Sbjct: 860 TETASDPEKTQDEAAAPATALQEHTISEDPLVPAESSTKTEEPSP 904


>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 1381

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 261  ISHPAWKQILVVLPTLWIAASLFIFW 338
            +S   W+   ++LPT     S+FIFW
Sbjct: 1120 LSRAIWEAFKIILPTTTRLYSIFIFW 1145


>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1483

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 367  TTLRGHCTHFQNMNSDAAIQRVGSTTKICFQAG 269
            TTL GHC   +N  S   +   G T+ I F  G
Sbjct: 1447 TTLSGHCHRSKNKGSPVGMVMSGQTSIISFVEG 1479


>SB_38680| Best HMM Match : DUF951 (HMM E-Value=7.3)
          Length = 169

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = -3

Query: 256 CSKANRGRRSKR-GPHVMSCMSRGTGGGRSGDMALSSGMREKVEEKD 119
           C    R   + R  PH+  CM  G    R     L++G     +E+D
Sbjct: 75  CPNCQRNMAASRFAPHLEKCMGMGRNSSRIASRRLATGKMMDEDEED 121


>SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 66  SPRKRCSHQPPPFTALRRSFSSTFSLIPEERA-ISPERPPPVPR 194
           SP K+ +  P P  +L R   +     P     + PERP PVPR
Sbjct: 243 SPHKKPAVPPAPDLSLTRKRMAPPPPTPSSGPMLKPERPTPVPR 286


>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 111 LRRSFSSTFSLIPEERAISPERPPP 185
           L+  F   F+ +PEE  I+P  PPP
Sbjct: 411 LQDVFEMKFAKMPEETIIAPPSPPP 435


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,916,543
Number of Sequences: 59808
Number of extensions: 300583
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)