Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P16
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.33 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.76 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   9.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   9.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
 Frame = -3

Query: 265 EIKCSKANRGRRSKRGPHVMSCMSRGTGGGRSGDMA---LSSGMREKVEEKDRRRAVN 101
           EI  S  + G ++     V  CMS   G G SG  +   LSSG   +     R    N
Sbjct: 570 EIINSSNDEGGKTSPNSAVRKCMSPINGSGASGSGSAENLSSGSNNQTSSASRENTSN 627


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
 Frame = -3

Query: 343  HFQNMNSDAAIQRVG---STTKICFQAGCEIKCSKANRGRRSKRGPHVMSCMSR 191
            +  N+N    I R     +  KICF     + C+       +K  P+   CM +
Sbjct: 1679 YHHNVNKHCTIHRTQVKETDDKICFTMRPVVSCASGCTAVETKSKPYKFHCMEK 1732


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 165  SPERPPPVPR 194
            SPE PPP PR
Sbjct: 1856 SPEPPPPPPR 1865


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 120 SFSSTFSLIPEERAISPERPPP 185
           S   TFSL+  E  ++ + PPP
Sbjct: 106 SCKETFSLLYYEFDVATKEPPP 127


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 398 LQTDSTANRLNNTQGALHAFPEYEQRCGYPE 306
           + +D   ++LN   G    F   E+  G+PE
Sbjct: 574 MPSDIFYDKLNKAIGGSEPFTYSEKMLGFPE 604


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 398 LQTDSTANRLNNTQGALHAFPEYEQRCGYPE 306
           + +D   ++LN   G    F   E+  G+PE
Sbjct: 574 MPSDIFYDKLNKAIGGSEPFTYSEKMLGFPE 604


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 17/67 (25%), Positives = 25/67 (37%)
 Frame = -3

Query: 313 IQRVGSTTKICFQAGCEIKCSKANRGRRSKRGPHVMSCMSRGTGGGRSGDMALSSGMREK 134
           +Q  G   K      C  +CS   +   SK      SCM     G R   ++L     + 
Sbjct: 38  LQYPGCVPKPIPSYACRGRCSSYLQVSGSKIWQMERSCMCCQESGEREASVSLFCPRAKP 97

Query: 133 VEEKDRR 113
            E+K R+
Sbjct: 98  GEKKFRK 104


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 133 LSPSYRKKEPY 165
           LSP   KKEPY
Sbjct: 79  LSPEVLKKEPY 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,798
Number of Sequences: 438
Number of extensions: 2868
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)