Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P16
(489 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11680.1 68416.m01432 expressed protein contains Pfam profile... 33 0.14
At4g18820.1 68417.m02778 expressed protein 29 1.7
At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A... 29 2.2
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl... 29 2.2
At5g44370.1 68418.m05433 transporter-related similar to vesicula... 28 3.9
At3g26350.1 68416.m03287 expressed protein ; expression support... 27 5.1
At3g15095.1 68416.m01909 expressed protein 27 5.1
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 27 5.1
At1g63340.1 68414.m07160 flavin-containing monooxygenase-related... 27 5.1
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 27 6.8
At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ... 27 6.8
At2g24490.1 68415.m02926 replication protein, putative similar t... 27 6.8
At2g20260.1 68415.m02367 photosystem I reaction center subunit I... 27 6.8
At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to hi... 27 6.8
At1g13990.1 68414.m01650 expressed protein 27 6.8
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ... 27 9.0
At5g37540.1 68418.m04521 aspartyl protease family protein weak s... 27 9.0
At4g15415.2 68417.m02357 serine/threonine protein phosphatase 2A... 27 9.0
At4g15415.1 68417.m02356 serine/threonine protein phosphatase 2A... 27 9.0
At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family... 27 9.0
At3g58650.1 68416.m06537 expressed protein 27 9.0
At1g61080.1 68414.m06877 proline-rich family protein 27 9.0
>At3g11680.1 68416.m01432 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 488
Score = 32.7 bits (71), Expect = 0.14
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +3
Query: 285 ILVVLPTLWIAASLFIFWKCVQCPLSVVKTIGRAISLKGYNKPRTVLISGGSSVQALHLA 464
+L + L+I+ + W + + T+G +S KG N+ LI+G V A+HLA
Sbjct: 60 LLYYVRPLYISFGVTGMWAILTVVVVFEFTVGGTLS-KGLNRGFATLIAGALGVGAVHLA 118
Query: 465 RNFHSAG 485
R F G
Sbjct: 119 RFFGHQG 125
>At4g18820.1 68417.m02778 expressed protein
Length = 1111
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -3
Query: 235 RRSKRGPHVMSCMSRGTGGGRSGDMALSSGMREKVEEKD 119
RR RG + SR TGGG+S +M+++S +VE+ D
Sbjct: 248 RRKFRGTRRVRGKSRDTGGGKS-EMSVASNTLPQVEKHD 285
>At5g25510.1 68418.m03035 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B', putative similar to
SWISS-PROT:Q28653 serine/threonine protein phosphatase
2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
subunit, B' delta isoform, PP2A, B subunit, B56 delta
isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
[Oryctolagus cuniculus]; contains Pfam domain, PF01603:
Protein phosphatase 2A regulatory B subunit (B56 family)
Length = 500
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 259 KCSKANRGR--RSKRGPHVMSCMSRGTGGGRSGDMALSSGMR 140
K SK++ G RS GP GT GG SG + +SG R
Sbjct: 12 KSSKSDSGELNRSSSGPVSSPVQRSGTSGGGSGPVRSNSGKR 53
>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
identical to ubiquitin-protein ligase 2 [Arabidopsis
thaliana] GI:7108523; E3, HECT-domain protein family;
similar to ubiquitin-protein ligase 2 GI:7108523 from
[Arabidopsis thaliana]
Length = 3658
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 14 LCARVQSPSAIQYRASIFAAEEMFASTAAVHGSTA 118
LC ++Q+PS +Q A++ A E +ST HGS++
Sbjct: 3188 LCEKIQTPSMLQQDATVTAGEVKESST---HGSSS 3219
>At5g44370.1 68418.m05433 transporter-related similar to vesicular
glutamate transporter 2 [Mus musculus] GI:15811369,
Na-dependent inorganic phosphate cotransporter [Homo
sapiens] GI:7328923; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 432
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 261 ISHPAWKQILVVLPTLWIAASLFIFWKCVQCPLSVVKT---IGRAISLKGYNKPRTV 422
++H WK+I++ LP I + F F + ++ + T +G ISL+G + + V
Sbjct: 217 VTHIPWKKIMLSLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQISLQGMDSSKMV 273
>At3g26350.1 68416.m03287 expressed protein ; expression supported
by MPSS
Length = 356
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 45 SNTELVFSPRKRCSHQPPPFTALRRSFSSTFSLIPEERAISPERPPPVP 191
S L+ SP +PPP A +R+ S +P SP R P P
Sbjct: 104 SKRPLLLSPEDNQQQRPPPPQAPQRNGGGYGSTLPPIPKPSPWRTAPTP 152
>At3g15095.1 68416.m01909 expressed protein
Length = 684
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -3
Query: 187 TGGGRSGDMALSSGMREKVEEKDRRRAVNGGG*CEHLFRGENTSSVLDRARRLYSGAQAG 8
T GG+ ++ L G ++VEE DRRR+ H+F G + S + + + G + G
Sbjct: 238 TSGGKRREIELVVGGEDEVEE-DRRRSRR-----RHVFEGLDLSEIEMKTEKKERGEEVG 291
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 93 PPPFTALRRSFSSTFSLIPEERAISPERPPPVP 191
PPP A+++S + P ++ SP PPP P
Sbjct: 241 PPPSIAVKQSAPTPSPPPPIKKGSSPSPPPPPP 273
>At1g63340.1 68414.m07160 flavin-containing monooxygenase-related /
FMO-related low similarity to flavin-containing
monooxygenase 2 (FMO2) from Homo sapiens [SP|Q99518]
Length = 398
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 402 YNKPRTVLISGGSSVQALHLARN 470
Y +PR LI GGSSV + ++R+
Sbjct: 175 YTEPRHALIPGGSSVSGVDISRD 197
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 27.1 bits (57), Expect = 6.8
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Frame = +3
Query: 9 PACAPEYSRLARSNTEL------VFSPRKRCSHQ-----PPPFTALRRSFSSTFSLIPEE 155
P P+ + ARS T + SP+ +HQ PPP + S SS S IP
Sbjct: 246 PISPPKSDKQARSQTHSSPSPPPLLSPKASENHQSKSPMPPPSPTAQISLSSLKSPIPSP 305
Query: 156 RAISPERPPPVPRLIQLITWGPR 224
I+ PPP + T P+
Sbjct: 306 ATITAP-PPPFSSPLSQTTPSPK 327
>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 386
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 389 DSTANRLNNTQGALHAFPEYEQR 321
DS AN +NN QG LH+ E + +
Sbjct: 27 DSMANPMNNEQGDLHSLSESQSQ 49
>At2g24490.1 68415.m02926 replication protein, putative similar to
replication protein A 30kDa [Oryza sativa (japonica
cultivar-group)] GI:13516746; contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain
Length = 279
Score = 27.1 bits (57), Expect = 6.8
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -3
Query: 349 CTHFQNMNSDAAIQRVGSTTK---ICFQAGCEIKCSKANRGRRSKRGPHVMSCMSRGTGG 179
C HF + NS++ Q+VG T+ FQ G +N + + P V S + G G
Sbjct: 161 CIHFYSQNSESQRQQVGDVTQSVNTTFQGG-------SNTNQATLLNPVVSSQNNDGNGR 213
Query: 178 GRSGDMAL 155
DM L
Sbjct: 214 KNLDDMIL 221
>At2g20260.1 68415.m02367 photosystem I reaction center subunit IV,
chloroplast, putative / PSI-E, putative (PSAE2)
identical to SP|Q9S714; similar to SP|P12354 Photosystem
I reaction center subunit IV, chloroplast precursor
(PSI-E) {Spinacia oleracea}; contains Pfam profile
PF02427: Photosystem I reaction centre subunit IV / PsaE
Length = 145
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 78 RCSHQPPPFTALRRSFSSTFSLIPEERAISPERPPPV 188
R + PP TA S S+T + P + + +PPP+
Sbjct: 46 RAAEDTPPATASSDSSSTTAAAAPAKVPAAKAKPPPI 82
>At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to
histidine kinase AHK3 [Arabidopsis thaliana]
gi|13537198|dbj|BAB40775
Length = 1036
Score = 27.1 bits (57), Expect = 6.8
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +3
Query: 276 WKQILVVLPTLWIAASLFIFW 338
W++++VV W+ S++ FW
Sbjct: 92 WRKLVVVWVVFWVLVSIWTFW 112
>At1g13990.1 68414.m01650 expressed protein
Length = 277
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 247 ANRGRRSK--RGPHVMSCMSRGTGGGRSGDMALSSGMREKVEE 125
++ GRR R H +SC S G GGG S + E+VE+
Sbjct: 45 SSSGRRISISRRRHFVSCKSTGGGGGGSDKLGGDEEESEEVEK 87
>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 671
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 127 LQLSPSYRKKEPYLRNDRRRCLDSYSSSHGDLACSCDLYSLCY 255
++L P+ P +N + RCL + D C C Y CY
Sbjct: 607 VELLPNNTSSRPLCKNCQCRCLGPFFVKDYDNICYCSYY--CY 647
>At5g37540.1 68418.m04521 aspartyl protease family protein weak
similarity to CND41, chloroplast nucleoid DNA binding
protein [Nicotiana tabacum] GI:2541876; contains Prosite
PS00141: Eukaryotic and viral aspartyl proteases active
site; contains 1 predicted transmembrane domain
Length = 442
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 69 PRKRCSHQPPPFTALRRSFSSTFSLIPEERAISPERPP 182
P+K PPP T+ S SS+FS +P + R P
Sbjct: 110 PKKIKKPLPPPTTSFDPSLSSSFSDLPCSHPLCKPRIP 147
>At4g15415.2 68417.m02357 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B' (B'gamma) identical to B'
regulatory subunit of PP2A [Arabidopsis thaliana]
GI:2160694; similar to SWISS-PROT:Q28653
serine/threonine protein phosphatase 2A, 56 kDa
regulatory subunit, delta isoform (PP2A, B subunit, B'
delta isoform, PP2A, B subunit, B56 delta isoform, PP2A,
B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta
isoform, PP2A, B subunit, B'-gamma) [Oryctolagus
cuniculus]; contains Pfam domain, PF01603: Protein
phosphatase 2A regulatory B subunit (B56 family)
Length = 522
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 440 TSATYKNGAGLIIPLQTDSTANRLNNTQGALHAFPEY 330
+SA+ NGA + + +++NR N G A P +
Sbjct: 49 SSASNSNGANGTVIAPSSTSSNRTNQVNGVYEALPSF 85
>At4g15415.1 68417.m02356 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B' (B'gamma) identical to B'
regulatory subunit of PP2A [Arabidopsis thaliana]
GI:2160694; similar to SWISS-PROT:Q28653
serine/threonine protein phosphatase 2A, 56 kDa
regulatory subunit, delta isoform (PP2A, B subunit, B'
delta isoform, PP2A, B subunit, B56 delta isoform, PP2A,
B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta
isoform, PP2A, B subunit, B'-gamma) [Oryctolagus
cuniculus]; contains Pfam domain, PF01603: Protein
phosphatase 2A regulatory B subunit (B56 family)
Length = 522
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 440 TSATYKNGAGLIIPLQTDSTANRLNNTQGALHAFPEY 330
+SA+ NGA + + +++NR N G A P +
Sbjct: 49 SSASNSNGANGTVIAPSSTSSNRTNQVNGVYEALPSF 85
>At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At3g25690,
At5g61090 [Arabidopsis thaliana]
Length = 681
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 24 EYSRLARSNTELVFSPRKRCSHQPPPFTALRRSFSSTFSLIPEERAISPERPPPVP 191
++S S T+ S K PPP T+ + S T S + ++ + PPP P
Sbjct: 276 DHSETTTSETDSTESSPKEDVPPPPPLTSPQTP-SPTVSTFNTKSSLRSQPPPPPP 330
>At3g58650.1 68416.m06537 expressed protein
Length = 723
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 172 SGDMALSSGMREKVEEKDR 116
SG+ +SSG +EKVE K+R
Sbjct: 220 SGNKRMSSGQKEKVEAKNR 238
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 51 TELVFSPRKRCSHQPPPFTALRRSFSSTFSLIPEER-AISPERPPPVP 191
T F P K + PPP L + ++ P R A++P PPP P
Sbjct: 496 TPPAFKPLKGSAPPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPP 543
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,423,812
Number of Sequences: 28952
Number of extensions: 211696
Number of successful extensions: 878
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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