Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P13
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    26   2.3  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   3.1  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   5.4  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    25   5.4  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    24   7.1  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    24   7.1  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    24   9.4  

>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 88  KESEVLTVWQIFILKVCISKHNQILNSP 171
           +E  ++ V Q+FIL++ I+    +L+SP
Sbjct: 273 REEIMMAVGQLFILRININLQGSVLDSP 300


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 177 IPRTI*YLIMFTNTHFKYKDLPDSKNFTFFANFSSWISIGPLKHNLKDK 31
           + +T+  L  +T  H K  +LP +  ++FF +      I  LK   KD+
Sbjct: 259 LAKTVPNLFRYTVAHQKISNLPTTDLWSFFLDKRYETRIKKLKEEQKDQ 307


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 208 RYNSLHKFVLHKDWLNS 258
           RY  +++FV  KDWL S
Sbjct: 230 RYRHMNRFVAFKDWLFS 246


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 208 RYNSLHKFVLHKDWLNSRLHIFT 276
           R+ SL+  +LH  ++ SRLHI++
Sbjct: 319 RHWSLYDSMLHSAYVGSRLHIWS 341


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 130 KVCISKHNQILNSPGYSQMLQRR 198
           K  I K  ++L SPG+SQ+++++
Sbjct: 87  KTTIMKQMRLLYSPGFSQVVRKQ 109


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +2

Query: 218 LCINSSCTKIG*IHDCTYLQH---GPFFFLSG 304
           LC+ +S T+ G + D   ++H    P F +SG
Sbjct: 343 LCVGASVTRTGLLLDMDVMEHISLHPLFIISG 374


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 194 DVYFDVTTLCINSSCTK 244
           DV F V   C+NS+C+K
Sbjct: 40  DVRFGVFGYCLNSNCSK 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,886
Number of Sequences: 5004
Number of extensions: 32188
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)