Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P13
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0707 - 5276963-5278396,5280163-5280248,5280634-5281011,528...    30   0.55 
08_02_0344 + 16054619-16054766,16055180-16055199                       29   1.3  
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535...    26   8.9  

>02_01_0707 -
           5276963-5278396,5280163-5280248,5280634-5281011,
           5281453-5281690,5281787-5282052,5282148-5282526
          Length = 926

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +1

Query: 151 NQILNSPGYSQ-MLQRRIF*R-YNSLHKFVLHKDWLNSRLHIFTTRSFFFFVGGKSIYAI 324
           +QI+ S    + M QRR+F   Y+ +    +H+        ++ +R+ FF  G  ++   
Sbjct: 476 SQIVESVTVEEAMAQRRLFILDYHDVFLPYVHRVRERPETTLYGSRTVFFLTGAGTLS-- 533

Query: 325 PLPIALVRPESP 360
           PL I L RP+SP
Sbjct: 534 PLAIELARPQSP 545


>08_02_0344 + 16054619-16054766,16055180-16055199
          Length = 55

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 368 IALGDSGLTNAIGKGIA*MLFPPTKKKKDRVVNMCS 261
           I++ DS  TNA  +  A  +FPP   + D V+  CS
Sbjct: 21  ISIADSSCTNASSRAFA-DVFPPFSNRTDDVLGYCS 55


>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
            5350375-5350589,5351123-5351393,5351986-5352161,
            5352287-5352394,5352821-5352930,5354291-5354393,
            5354658-5354828,5354952-5355080,5355322-5355504,
            5355612-5355701,5355823-5355934,5356100-5356227,
            5357769-5357825,5357872-5357923,5358318-5358393,
            5358860-5358950,5359046-5359224,5359563-5359681,
            5359783-5359880
          Length = 1955

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 220  LHKFVLHKDWLNSRLHI--FTTRSFFFFVGGKSIY 318
            LHK  L  DW + +LHI     R  F F  G+ +Y
Sbjct: 943  LHKSELSGDWWSCKLHIPKEAYRLDFVFFNGRLVY 977


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,412,097
Number of Sequences: 37544
Number of extensions: 197061
Number of successful extensions: 406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)