Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P13
         (384 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC128053-1|AAI28054.1|  409|Homo sapiens EMR3 protein protein.         29   3.9  

>BC128053-1|AAI28054.1|  409|Homo sapiens EMR3 protein protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 185 ICEYPGLFSI*LCLLIHTLSIKICQTVR---TSLSLQTSAVGYL*DLL 51
           +  Y GL    LCLL+  L+  +C+ +R   TSL LQ S   +L  LL
Sbjct: 358 VITYVGLSVSLLCLLLAALTFLLCKAIRNTSTSLHLQLSLCLFLAHLL 405


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,361,253
Number of Sequences: 237096
Number of extensions: 1189368
Number of successful extensions: 1972
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1972
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2583773550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)