Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P13
(384 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64846-1|AAG24113.2| 352|Caenorhabditis elegans Serpentine rece... 29 1.5
Z82287-1|CAB05316.1| 366|Caenorhabditis elegans Hypothetical pr... 27 3.4
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 27 3.4
AL032639-4|CAA21636.2| 858|Caenorhabditis elegans Hypothetical ... 27 3.4
Z81564-9|CAB04575.1| 724|Caenorhabditis elegans Hypothetical pr... 27 6.0
DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein. 27 6.0
DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-couple... 27 6.0
AF125954-6|AAD14707.2| 346|Caenorhabditis elegans Serpentine re... 27 6.0
AF026211-1|AAB71293.2| 600|Caenorhabditis elegans Sodium:neurot... 27 6.0
AC084158-7|AAK68560.1| 929|Caenorhabditis elegans Hypothetical ... 27 6.0
AC006769-7|AAF60589.1| 346|Caenorhabditis elegans Serpentine re... 27 6.0
Z82086-2|CAB04995.2| 309|Caenorhabditis elegans Hypothetical pr... 26 7.9
>U64846-1|AAG24113.2| 352|Caenorhabditis elegans Serpentine
receptor, class t protein3 protein.
Length = 352
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 197 VYFDVTTLCINSSCTKIG*IHDCTYLQHGPFFFLSGGKA 313
V FD T L INS T I + ++ Q+ FFF+ G A
Sbjct: 75 VVFDFTNLIINSLITGILALTGTSFCQYPRFFFIVGAIA 113
>Z82287-1|CAB05316.1| 366|Caenorhabditis elegans Hypothetical
protein ZK550.1 protein.
Length = 366
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 149 CLLIHTLSIKICQTVRTSLSLQTSAVGYL 63
CLL H I+ C RT+ + T+ +G++
Sbjct: 46 CLLSHWFRIQFCDASRTARAAVTTPIGFI 74
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +1
Query: 67 YPTAEVCKESEVLTVWQIFILK 132
Y EVCKE E LTV Q ILK
Sbjct: 171 YQQFEVCKEGEPLTVEQAKILK 192
>AL032639-4|CAA21636.2| 858|Caenorhabditis elegans Hypothetical
protein Y38F1A.3 protein.
Length = 858
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 132 FKYKDLPDSKNFTFFANFSSWISIGPLKHNLKDKALC 22
FKY+ LP+ T F +S ++++G + L +K C
Sbjct: 552 FKYRYLPEFFKLTEFRRWSHFVNLGNHQDCLSEKPSC 588
>Z81564-9|CAB04575.1| 724|Caenorhabditis elegans Hypothetical
protein K05C4.9 protein.
Length = 724
Score = 26.6 bits (56), Expect = 6.0
Identities = 26/85 (30%), Positives = 37/85 (43%)
Frame = -2
Query: 302 PTKKKKDRVVNMCSREFNQSLCKTNLCREL*RQNIRRCNICEYPGLFSI*LCLLIHTLSI 123
PT KK R+ + N L T LC + +R E L S+ LLI
Sbjct: 47 PTSKKAIRIPELVLNLTNVDLRNTTLCHNT-IEMLRTQRTLESLALGSL---LLIK--KD 100
Query: 122 KICQTVRTSLSLQTSAVGYL*DLLN 48
+C+T R + +T+ V L D+LN
Sbjct: 101 YLCETGRLERNCRTNIVALLKDILN 125
>DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein.
Length = 600
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 174 PRTI*YLIMFTNTHFKYKDLPDSKNFTFFANFSSW 70
P T L +F ++ PD K+F F+AN W
Sbjct: 502 PATSLVLFVFCVVYYHPVKYPDGKDFPFWANAFGW 536
>DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-coupled
betaine transporterprotein protein.
Length = 600
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 174 PRTI*YLIMFTNTHFKYKDLPDSKNFTFFANFSSW 70
P T L +F ++ PD K+F F+AN W
Sbjct: 502 PATSLVLFVFCVVYYHPVKYPDGKDFPFWANAFGW 536
>AF125954-6|AAD14707.2| 346|Caenorhabditis elegans Serpentine
receptor, class t protein1 protein.
Length = 346
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 206 DVTTLCINSSCTKIG*IHDCTYLQHGPFFFLSGGKA 313
D+ +LCINS T I+ T+ Q+ F F+ G A
Sbjct: 81 DLISLCINSLVTGYLAINGITFCQYPLFMFIIGAIA 116
>AF026211-1|AAB71293.2| 600|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 3
protein.
Length = 600
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 174 PRTI*YLIMFTNTHFKYKDLPDSKNFTFFANFSSW 70
P T L +F ++ PD K+F F+AN W
Sbjct: 502 PATSLVLFVFCVVYYHPVKYPDGKDFPFWANAFGW 536
>AC084158-7|AAK68560.1| 929|Caenorhabditis elegans Hypothetical
protein Y69A2AR.16 protein.
Length = 929
Score = 26.6 bits (56), Expect = 6.0
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -3
Query: 370 LLHWGTPVSLMQ*VRVLRKCFSPRQKKKRTVL*ICAVVNLTNLCARRIYAESCNVKIYVV 191
+LH+G+P + + + L F ++ TV C L+N C IYAESC+ ++
Sbjct: 809 VLHFGSPANKGRCTQNLAFLF---KEMLPTVFETC----LSNTCENSIYAESCSALYALI 861
Query: 190 A 188
A
Sbjct: 862 A 862
>AC006769-7|AAF60589.1| 346|Caenorhabditis elegans Serpentine
receptor, class t protein2 protein.
Length = 346
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 206 DVTTLCINSSCTKIG*IHDCTYLQHGPFFFLSGGKA 313
D+ +LCINS T I+ T+ Q+ F F+ G A
Sbjct: 81 DLISLCINSLVTGYLAINGITFCQYPLFMFIIGAIA 116
>Z82086-2|CAB04995.2| 309|Caenorhabditis elegans Hypothetical
protein ZK228.3 protein.
Length = 309
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 262 VVNLTNLCARRIYAESCNVKIYVVATSVNT-QDYLVFD 152
VVNL LCA YAE+ V ++A + + D+ F+
Sbjct: 213 VVNLNRLCAAPFYAENVEVAEVLMADMMKSIPDFASFE 250
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,154,804
Number of Sequences: 27780
Number of extensions: 186720
Number of successful extensions: 479
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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