Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P13
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   2.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   2.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   2.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   4.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   8.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   8.6  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 223 AESCNVKIYVVATSVNTQDYLV 158
           AE CN K Y + + +NT  Y V
Sbjct: 140 AERCNFKAYCLFSFLNTIVYCV 161


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 191 NDVYFDVTTLCINSSCTKI 247
           N+VY D   +C  +SCT +
Sbjct: 309 NNVYKDALIVCTVNSCTSM 327


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 191 NDVYFDVTTLCINSSCTKI 247
           N+VY D   +C  +SCT +
Sbjct: 362 NNVYKDALIVCTVNSCTSM 380


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 34  IFKVMFKRSYRYPTAEVCKESEVLTV 111
           +FK    R Y Y   E C   E+ TV
Sbjct: 431 LFKTFKDRKYLYMLMEACLGGELWTV 456


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 136 CISKHNQILNSPGYSQMLQRR 198
           CI      +N P Y Q LQ+R
Sbjct: 330 CIDPWIYAINHPRYRQELQKR 350


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 20   EHNALSLRLCL 52
            EH A  LRLCL
Sbjct: 1089 EHGAAGLRLCL 1099


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 136 CISKHNQILNSPGYSQMLQRR 198
           CI      +N P Y Q LQ+R
Sbjct: 330 CIDPWIYAINHPRYRQELQKR 350


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 HRCCNDVYFDVT 214
           + CC++ Y D+T
Sbjct: 224 YTCCDEPYLDIT 235


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 HRCCNDVYFDVT 214
           + CC++ Y D+T
Sbjct: 224 YTCCDEPYLDIT 235


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 HRCCNDVYFDVT 214
           + CC++ Y D+T
Sbjct: 220 YTCCDEPYLDIT 231


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 179 HRCCNDVYFDVTTLCI 226
           + CC + Y D+T + I
Sbjct: 211 YNCCPEPYIDITFVVI 226


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 HRCCNDVYFDVT 214
           ++CC + Y DVT
Sbjct: 174 YQCCPEPYVDVT 185


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 HRCCNDVYFDVT 214
           ++CC + Y DVT
Sbjct: 174 YQCCPEPYVDVT 185


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 HRCCNDVYFDVT 214
           ++CC + Y DVT
Sbjct: 174 YQCCPEPYVDVT 185


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 HRCCNDVYFDVT 214
           ++CC + Y DVT
Sbjct: 174 YQCCPEPYVDVT 185


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 HRCCNDVYFDVT 214
           ++CC + Y DVT
Sbjct: 174 YQCCPEPYVDVT 185


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 HRCCNDVYFDVT 214
           ++CC + Y DVT
Sbjct: 174 YQCCPEPYVDVT 185


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 HRCCNDVYFDVT 214
           ++CC + Y DVT
Sbjct: 242 YQCCPEPYVDVT 253


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 179 HRCCNDVYFDVT 214
           ++CC + Y DVT
Sbjct: 242 YQCCPEPYVDVT 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,644
Number of Sequences: 438
Number of extensions: 2360
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)