Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P13
         (384 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11720.1 68414.m01345 starch synthase, putative strong simila...    29   1.4  
At2g22530.1 68415.m02672 phosphatidylinositolglycan-related simi...    27   3.3  
At4g33890.2 68417.m04809 expressed protein                             27   4.3  
At4g33890.1 68417.m04808 expressed protein                             27   4.3  
At3g49190.1 68416.m05376 condensation domain-containing protein ...    27   4.3  
At5g48130.1 68418.m05945 phototropic-responsive NPH3 family prot...    26   7.5  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    26   7.5  
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea...    26   9.9  
At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7% ident...    26   9.9  
At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative (CH...    26   9.9  

>At1g11720.1 68414.m01345 starch synthase, putative strong
           similarity to soluble-starch-synthase [Solanum
           tuberosum] GI:1911166
          Length = 1025

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 220 LHKFVLHKDWLNSRLHI--FTTRSFFFFVGGKSIY 318
           L K  +H+DWL+  LHI     +  F F  G+S+Y
Sbjct: 174 LEKTWIHEDWLSCLLHIPKEAYKMDFVFFNGQSVY 208


>At2g22530.1 68415.m02672 phosphatidylinositolglycan-related similar
           to Pig-o [Mus musculus] GI:8099973
          Length = 897

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 34  IFKVMFKRSYRYPTAEVCKESEVLTVWQIFILKVCI 141
           +F  +FK  Y  P   VC  S +L + ++FI  + +
Sbjct: 490 VFLSLFKEVYHEPKDRVCSLSNLLNLEEVFIFALLL 525


>At4g33890.2 68417.m04809 expressed protein
          Length = 342

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 326 GIA*MLFPPTKKKKDRVVNMCSREFNQSLCKTN 228
           G++  L     +K    V+MCSR FN+  C+ N
Sbjct: 199 GVSMSLRNGATRKSVSNVSMCSRSFNRETCQNN 231


>At4g33890.1 68417.m04808 expressed protein
          Length = 342

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 326 GIA*MLFPPTKKKKDRVVNMCSREFNQSLCKTN 228
           G++  L     +K    V+MCSR FN+  C+ N
Sbjct: 199 GVSMSLRNGATRKSVSNVSMCSRSFNRETCQNN 231


>At3g49190.1 68416.m05376 condensation domain-containing protein
           contains Pfam profile PF00668: Condensation domain
          Length = 522

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 140 LVNIIKY*IVLGIHRCCNDVYFDVTTLCINSSCTKI 247
           LV +I   ++LG++  C+ + F VTTL +  + T I
Sbjct: 203 LVKVIWTAVILGLNTVCDALEFIVTTLFVKDTETPI 238


>At5g48130.1 68418.m05945 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 625

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 141 NTHFKYKDLPDSKNFTFFANFS 76
           NTH  +KD  DS  FT  A+FS
Sbjct: 469 NTHQAFKDCSDSFRFTNSADFS 490


>At1g03060.1 68414.m00280 WD-40 repeat family protein /
           beige-related similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; Similar to gb|U70015 lysosomal trafficking
           regulator from Mus musculus and contains 2 Pfam PF00400
           WD-40, G-beta repeats. ESTs gb|T43386 and gb|AA395236
           come from this gene
          Length = 3601

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 137 HTLSIKICQTVRTSLSLQTSAVGYL*DLLNITLKIKRCALSVL 9
           H  + ++CQ +RT   L  +  G+   L +I LKI   A++V+
Sbjct: 527 HVENYRLCQELRTVPLLVLNMAGFPSSLQDIILKILEYAVTVV 569


>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
           family protein similar to Will die slowly protein
           (SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
           PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
          Length = 330

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 296 KKKKDRVVNMCSREFNQSLCKTNLCREL*RQNIRRCNICE 177
           K  KDRVV++C    N S    +L R +   ++ R N C+
Sbjct: 111 KGHKDRVVSLCMSPINDSFMSGSLDRSVRLWDL-RVNACQ 149


>At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7%
           identical to F-box protein family, AtFBL4 (GP:21536497)
           [Arabidopsis thaliana]; similar to grr1 GI:2407790 from
           [Glycine max]
          Length = 610

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 224 CREL*RQNIRRCNICEYPGLFSI*L-CLLIHTLSIKICQTV 105
           CR L + +IRRC      G+ SI   C  +  LS++ C  V
Sbjct: 423 CRNLKKLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDKV 463


>At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative
           (CHX13) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 831

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 21/84 (25%), Positives = 36/84 (42%)
 Frame = +1

Query: 28  RFIFKVMFKRSYRYPTAEVCKESEVLTVWQIFILKVCISKHNQILNSPGYSQMLQRRIF* 207
           RF+   ++  S RY +    K + + T      L++ +  +N + N P    +L+     
Sbjct: 443 RFLVVYLYDPSKRYKSKS--KRTILNTRQHNLQLRLLLGLYN-VENVPSMVNLLEATYPT 499

Query: 208 RYNSLHKFVLHKDWLNSRLHIFTT 279
           R+N +  F LH   L  R H   T
Sbjct: 500 RFNPISFFTLHLVELKGRAHALLT 523


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,470,903
Number of Sequences: 28952
Number of extensions: 164794
Number of successful extensions: 377
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)