Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P12
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    46   2e-06
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    43   2e-05
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    42   5e-05
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    28   0.60 
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    26   1.8  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    26   2.4  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    25   3.2  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    25   5.6  
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    24   7.4  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    24   7.4  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    24   7.4  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    24   9.8  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    24   9.8  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 46.0 bits (104), Expect = 2e-06
 Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = +3

Query: 162 EHLKPEFLKLNPQHTVPTLVD---DGLSIWESRAIITYLVNKYGKGSSL-YPEDARARAL 329
           E   PE L LNP   VPTL+D   +  +IWES AI+ YL +KY     +  P D      
Sbjct: 40  EQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDTERKISLPRDHPEYYK 99

Query: 330 VDQRLYF 350
           V Q L+F
Sbjct: 100 VIQYLFF 106


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 42.7 bits (96), Expect = 2e-05
 Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +3

Query: 159 GEHLKPEFLKLNPQHTVPTLVD---DGLSIWESRAIITYLVNKY 281
           GE    E L LNP   VPTLVD   +  +IWES AI+ YL +KY
Sbjct: 39  GEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIYLADKY 82


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 41.5 bits (93), Expect = 5e-05
 Identities = 22/64 (34%), Positives = 33/64 (51%)
 Frame = +3

Query: 174 PEFLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVDQRLYFD 353
           P + KL+P    P +VDDG++  ES AI+ +LV KYG       ED       +  ++F 
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMHFS 99

Query: 354 IGTL 365
             +L
Sbjct: 100 EASL 103


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 27.9 bits (59), Expect = 0.60
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 225 DGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVDQRLYF 350
           + LSI ESR  I  +  ++G  S L+P D +  A  + RL F
Sbjct: 263 NSLSI-ESRLTIANMTTEWGALSGLFPTDEKLLAWYEDRLKF 303


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 222 DDGLSIWESRAIITYLVNKYGKGSSL 299
           +  + IW+ R ++  L+N +G G+S+
Sbjct: 6   EKAIEIWKIRRLVKQLINCHGNGTSM 31


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +3

Query: 171 KPEFLKLNPQHTVPTLVDDGL---SIWESRAIITYLVNKY 281
           KP+FL  NPQ  V + V +GL   +  E    + YL+ +Y
Sbjct: 349 KPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRY 388


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 362 GTNVKVQALIDERPRSSVFWVEAAAFTVL 276
           GT+ KV   ID   +S +F+   AAF +L
Sbjct: 263 GTDAKVFIWIDRNSKSVLFFAFLAAFAIL 291


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 96  QLCRAPTRERSTNQSSLFCFFK*ETGTRKPS 4
           +LCR+ +    + Q+ L+C  K ++ T++PS
Sbjct: 171 RLCRSASSVHISYQNGLYCIDKDKSLTKEPS 201


>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 216 LVDDGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTL 365
           LVD GL IW + A +  L  K   G    P   RA  +   R YF   T+
Sbjct: 90  LVDQGLPIWGTCAGMILLSKKSRGGKFPDPYLLRAMDIEVTRNYFGPQTM 139


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 392 IEVISESLVEGTNVKVQALIDERPRSSVFWVEAAAFTVLVDQVSDDGARL 243
           I+ ++ES +EG +V+  AL  E    +   ++     V VD +  DG  +
Sbjct: 251 IQFLNESEIEGQHVEEPALPSETSVPANSTLQVPTENVEVDVLGKDGTNI 300


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 159 GEHLKPEFLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSS 296
           GE+  P  ++   QH +P + +DGL       +IT+L    G G++
Sbjct: 285 GENAGPRKVETIKQHKIPAINEDGLFY-----LITHLPASGGTGAA 325


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 253 PSSLTWSTSTVKAAASTQKTLERGRSSISACTLTLVPSTRDSEITSI 393
           P  +  S+S+  AA+ST  T     S +S+ TLT    +  S  TSI
Sbjct: 105 PVDIDPSSSSSSAASSTTSTTSSS-SLVSSTTLTSSSPSAVSSTTSI 150


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -1

Query: 338 LIDERPRSSVFWVEAAAFTVLVDQVSD 258
           L+D  P  +V W+    + + V+++S+
Sbjct: 365 LVDRHPEKAVTWLAVGIYYLCVNKISE 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,465
Number of Sequences: 5004
Number of extensions: 22525
Number of successful extensions: 51
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)