Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P12
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          38   0.004
SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)                 29   1.8  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.2  
SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)             28   3.2  
SB_59367| Best HMM Match : VWA (HMM E-Value=0)                         27   4.2  
SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)              27   4.2  
SB_24819| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)                      27   7.3  
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_6520| Best HMM Match : MANEC (HMM E-Value=2.2e-12)                  26   9.6  
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023)                26   9.6  
SB_10048| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  

>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 174 PEFLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSSLYPEDARARA 326
           PE+L +NP   VP +V +G +++ES   I ++   +    ++ P+D   RA
Sbjct: 299 PEWLAINPNGLVPVIVHNGNAVYESSICIEFIDEAFSTPVTILPKDPYKRA 349


>SB_44143| Best HMM Match : Tash_PEST (HMM E-Value=1.1)
          Length = 613

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 246 SRAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 368
           +R  I+Y+VN+YG  ++ Y E    +A     +Y D   +Y
Sbjct: 513 TRGGISYIVNRYGNANNKYIESYDEQAPSKYVMYLDADNVY 553


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 249  RAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 368
            R  I+Y+ N+YG+ ++ Y E     A     +Y D   LY
Sbjct: 2089 RGGISYIANRYGEANNEYMESYDETAPSKYVMYLDANNLY 2128


>SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)
          Length = 583

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 249 RAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 368
           R  I+Y+ N+YG+ ++ Y E     A     +Y D   LY
Sbjct: 175 RGGISYIANRYGEANNEYMESYDETAPSKYVMYLDANNLY 214


>SB_59367| Best HMM Match : VWA (HMM E-Value=0)
          Length = 847

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 213 TLVDDGLSIWESRAIITYLVNKYGK 287
           T++D G S +  R II ++++KYG+
Sbjct: 452 TMLDSGESFFTMRNIIKHIISKYGR 476


>SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)
          Length = 774

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 249 RAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 368
           R  I+Y+ N+Y K ++ Y E     A     +Y D   LY
Sbjct: 302 RGGISYIANRYSKANNKYMESYDETAPSKYFMYLDANNLY 341


>SB_24819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 249 RAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 368
           R  I Y+ N+Y K ++ Y E     A     +Y D   LY
Sbjct: 191 RGGIPYIANRYSKANNKYMESYDETAPSKYVMYLDANNLY 230


>SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 252 RATPRSRGRHRLA*GPCAEDSTSEIQVSGAPRGGDRPT 139
           R TPRSR R R         ++S     G+ RGG + T
Sbjct: 187 RLTPRSRSRSRTITPSTPSTTSSRASSRGSARGGAKTT 224


>SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)
          Length = 127

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +1

Query: 256 SSLTWSTSTVKAAASTQKTLERGRSSISACTLTLVPSTRDSEITS 390
           S++ W+T+T     +T  T    +++ +  T T   +   +EIT+
Sbjct: 49  SNIKWTTTTTSTITTTTTTTTTTKTTTTTTTKTTTTTATTTEITT 93


>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 244 SRAPSSLTWSTSTVKAAASTQKTLE 318
           S +PSS+T STST +A ++T  T E
Sbjct: 245 SPSPSSITTSTSTFEATSTTTATDE 269


>SB_6520| Best HMM Match : MANEC (HMM E-Value=2.2e-12)
          Length = 452

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 201 HTVPTLVDDGLSIWESRAIITYLVNKYGKGSSLYPEDARA 320
           H +PT +      + S+ I+    +  G G  +YP+ ARA
Sbjct: 331 HPMPTTLAKAPLTYPSKGIVIEKGHSCGYGQQVYPQGARA 370


>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1922

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = +3

Query: 156  HGEHLKPEFLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVD 335
            HG H K EF  L+P       VDD   I     +   LV+   +   L P D R   L+ 
Sbjct: 1393 HGRHEKGEFAPLSP------FVDDKRIIRVGGRVDAALVSYDTRHPILLPSDHRGALLIK 1446

Query: 336  QRLY 347
            + L+
Sbjct: 1447 RHLH 1450


>SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023)
          Length = 650

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 271 STSTVKAAASTQKTLERGRSSISACTLTLVPSTRDSEITS 390
           STS    AASTQ+     + S++  + T +PST     +S
Sbjct: 379 STSLQHTAASTQRMSSGSKGSLALSSHTTLPSTSQQPSSS 418


>SB_10048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 153 HHGEHLKPEFLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSS 296
           H G+  K +F        +  L +DG+ +W+   I  +   K GK  S
Sbjct: 6   HRGQIKKVKFAPGRGNFKLAVLFNDGMDVWDLHQIELHSSYKIGKEGS 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,053,683
Number of Sequences: 59808
Number of extensions: 191529
Number of successful extensions: 516
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)