Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P11
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 297 5e-82
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 297 5e-82
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 297 5e-82
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 87 1e-18
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 60 2e-10
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 46 4e-06
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 31 0.14
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 1.3
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 27 2.3
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 3.1
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 26 3.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.1
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 3.1
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 4.1
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 5.4
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 7.2
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 25 9.5
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 9.5
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 297 bits (730), Expect = 5e-82
Identities = 132/177 (74%), Positives = 155/177 (87%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
QDVYKIGGIGTVPVGRVETG++KPG++V FAPA +TTEVKSVEMHHE+L +PGDNVGF
Sbjct: 249 QDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGF 308
Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
NVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIAC
Sbjct: 309 NVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIAC 368
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
KFAE+ EK+DRR+GK E++PK +KSGDA I +VPSK +CVE+F ++ LGRFAVR
Sbjct: 369 KFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVR 425
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 297 bits (730), Expect = 5e-82
Identities = 132/177 (74%), Positives = 155/177 (87%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
QDVYKIGGIGTVPVGRVETG++KPG++V FAPA +TTEVKSVEMHHE+L +PGDNVGF
Sbjct: 249 QDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGF 308
Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
NVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIAC
Sbjct: 309 NVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIAC 368
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
KFAE+ EK+DRR+GK E++PK +KSGDA I +VPSK +CVE+F ++ LGRFAVR
Sbjct: 369 KFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVR 425
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 297 bits (730), Expect = 5e-82
Identities = 132/177 (74%), Positives = 155/177 (87%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
QDVYKIGGIGTVPVGRVETG++KPG++V FAPA +TTEVKSVEMHHE+L +PGDNVGF
Sbjct: 249 QDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGF 308
Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
NVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PVLDCHTAHIAC
Sbjct: 309 NVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIAC 368
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
KFAE+ EK+DRR+GK E++PK +KSGDA I +VPSK +CVE+F ++ LGRFAVR
Sbjct: 369 KFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVR 425
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 87.4 bits (207), Expect = 1e-18
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 1/174 (0%)
Frame = +1
Query: 22 KIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSV-EMHHEALQEAVPGDNVGFNVK 198
K +GT+ G++E G +K V+ P N T EV ++ + E + ++ GD V V+
Sbjct: 476 KYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVR 535
Query: 199 NVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFA 378
+++ GYV +KN P F AQ+ +L P ++ GY+ V+ HTA FA
Sbjct: 536 GDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFA 593
Query: 379 EIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
++ K+D +T + ++ P G I L +C+E F+++ +GRF +R
Sbjct: 594 KLLHKLD-KTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLR 646
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 60.1 bits (139), Expect = 2e-10
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPG--IVVVFAPANITTEVKSVEMHHEALQEAVPGDNV 183
+DV+ I G GTV GRVE G LK G I +V +++ T V +EM + L AV GDN
Sbjct: 258 EDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAAVAGDNC 317
Query: 184 GFNVKNVSVKELRRGYV 234
G ++++ ++L+RG +
Sbjct: 318 GLLLRSIKREQLKRGMI 334
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 46.0 bits (104), Expect = 4e-06
Identities = 51/177 (28%), Positives = 78/177 (44%), Gaps = 1/177 (0%)
Frame = +1
Query: 13 DVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQE-AVPGDNVGF 189
DVY+ TV GRVE G ++ V+ + VK+V + + AV GD V
Sbjct: 411 DVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTL 469
Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
+ ++ V +LR G + + +N P R F A++ + G I +G T VL H+
Sbjct: 470 QLADIEVNQLRPGDILSNYEN-PVRRVRSFVAEIQTFDIHGPILSGSTLVL-----HLGR 523
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
+ K+ K + + S K I L LC+ +E PALGRF +R
Sbjct: 524 TVTSVSLKIVTVNNKRSR-HIASRKRALVRISFLDGLFPLCLA--EECPALGRFILR 577
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 30.7 bits (66), Expect = 0.14
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = -2
Query: 218 NSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTIPGFRIPVSTLPTGTV 39
N+ + + T+ + + ASC S + + +SVV+ + +T T+ + VST TGTV
Sbjct: 57 NTTSASVQTIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTV 114
Query: 38 PIPPILYTSC 9
+P +C
Sbjct: 115 YVPYTSSVAC 124
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2
Query: 461 MAASPDLIDLGLSSVDLPVRRSTFS 387
++ +PDL D+ LSSVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 137 STDLTSVVMLAGAKTTTIPGFRIPVSTLPTGT--VPIPPILYTSCP 6
++DLT+ L +T+ + + + PT T +PIP +L + P
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVLPPTQP 660
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 261 QGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 401
+GS ++S + +S + I CIG+ SPH +C R Q +P
Sbjct: 90 KGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 140 CTTRLYKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGEL 271
CT + KL+PV L T + A+ T+ I T PG++
Sbjct: 196 CTMSIEGKLFPVETLFLQKPTENYVDSAIETVININSTYPPGDI 239
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 3.1
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Frame = -2
Query: 227 PRRNSLTDTFLTLKPTLSPGTASCRA-----SWCISTDLTSVVMLAGAKTTTIPGFRIPV 63
P S TDT + PT S + + S +ST +T V +T+IP
Sbjct: 209 PTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST 268
Query: 62 STLPTGTVPIPPILYTSC 9
S+ T + P+ P TSC
Sbjct: 269 SSTDTNSSPL-PTTSTSC 285
Score = 25.0 bits (52), Expect = 7.2
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = -2
Query: 227 PRRNSLTDTFLTLKPTLSPGTASCRA------SWCISTDLTSVVMLAGAKTTTIPGFRIP 66
P S TDT PT S + + S +ST +T V +T+IP
Sbjct: 152 PTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTS 211
Query: 65 VSTLPTGTVPIPPILYTSC 9
S+ T + P+ P TSC
Sbjct: 212 TSSTDTNSSPL-PTTSTSC 229
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -2
Query: 482 LEGTRLTMAASPDLIDLGLSSVDLPVRRSTFSLISANLQAMWAVWQSNTGVYPF 321
LE R ++ +L+D LSSV L + + S++S+ + + + G+ PF
Sbjct: 122 LEVKRTEGVSTTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 410 PVRRSTFSLISANLQAMWAVWQSNTGVY 327
P +RST S ++ L W + N GVY
Sbjct: 330 PKKRSTHSYVAKILNPEWDAFLKNEGVY 357
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 405 TTVDFLFDFGKFAGYVGCVAIQYRCVSV*YLTWV 304
T +D+LF F+ +G + Y ++V Y+ WV
Sbjct: 73 TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +2
Query: 170 PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 349
P + +++ S + S + +VT ++ TTH +++T + T + D+H +
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTFLTT 438
Query: 350 TQPT*PAN 373
P+ P+N
Sbjct: 439 ITPS-PSN 445
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 69 YPKAWYCCRFCPC*HH 116
YPK CC+FC HH
Sbjct: 147 YPKGG-CCKFCSSVHH 161
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 386 LISANLQAMWAVWQSNTGV 330
L+SA+ W +W +TGV
Sbjct: 280 LVSASFDTTWRLWDVHTGV 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,169
Number of Sequences: 5004
Number of extensions: 52795
Number of successful extensions: 167
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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