Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P11
(540 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 301 2e-82
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 45 3e-05
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.085
SB_13788| Best HMM Match : rve (HMM E-Value=0.00016) 33 0.11
SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3) 30 1.4
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) 30 1.4
SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06) 29 3.2
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013) 28 4.2
SB_35682| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 28 5.6
SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025) 28 5.6
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066) 27 7.4
SB_21621| Best HMM Match : FKBP_N (HMM E-Value=7.3) 27 9.8
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 27 9.8
SB_18605| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 301 bits (739), Expect = 2e-82
Identities = 135/177 (76%), Positives = 157/177 (88%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
QDVYKIGGIGTVPVGRVETG+LKPG VV F+P+NITTEVKSVEMHHE+L EA+PGDNVGF
Sbjct: 110 QDVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGF 169
Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
NVKNVSVK+++RG VAGD KNNPP+ FTAQVIV+NHPG+I GY+PVLDCHTAHIAC
Sbjct: 170 NVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIAC 229
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
KF ++ EK+DRR+GK EDNPK IK+GDAA+V ++PSK +CVE+F EFP LGRFAVR
Sbjct: 230 KFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVR 286
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 394 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
+D++TGK + P+ IK AI L +C+E F +F +GRF +R
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLR 544
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 33.9 bits (74), Expect = 0.085
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Frame = +1
Query: 40 TVPVGRVETGILKPGIVVVFAPANI----TTEVKSVEMHHEALQEAVPGDNVGFNVKNVS 207
T+ V GIL G +V P T + S++ + + G + + +
Sbjct: 329 TLASADVRRGILHEGDTLVVGPLCSGHFQTVRILSLKRNRAPCRVVRAGQSASAALSGIE 388
Query: 208 VKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGY 330
ELRRG V D P R F A V +L HP IS +
Sbjct: 389 RHELRRGMVMTDPSLEP-RACMCFWADVYLLFHPAAISKRF 428
>SB_13788| Best HMM Match : rve (HMM E-Value=0.00016)
Length = 508
Score = 33.5 bits (73), Expect = 0.11
Identities = 31/112 (27%), Positives = 49/112 (43%)
Frame = +2
Query: 155 YKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTH 334
++ L+ VT+ VST T LS T++ R TH Q+S+ S C +Q + Q D
Sbjct: 19 FQDLFSVTLEVSTL-TALSAYYEGATVERRRAHTH----QSSENLSCCRRSQEECQVDER 73
Query: 335 LYWIATQPT*PANLPKSKRKSTVVLVNQQRTTLNRLNLVMPPLSTWFPPSAC 490
L W + P + +K+K V ++ ++R L W S C
Sbjct: 74 LIWSSRCTKKPPSKEAAKKKKP-TRVTKREVQVHRFCLWKGMPEKWEEESFC 124
>SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 331 TPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVE 498
TPVL TAH+ K ++ + D P ++KS ++VN V S L E
Sbjct: 223 TPVLRIKTAHVTDKDNRVRSVLIIDNISQAPDTPATLKSSSDSVVNSVGSVGLVAE 278
>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
Length = 447
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = -2
Query: 212 LTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTIPGFRIPVSTLPTGTVPI 33
+T +T+ + + T+ +TD+TS+ M+ TT I + ++T T I
Sbjct: 124 ITSITMTITTSTTDITSKTMIITTSTTDITSITMIITTSTTDITSITMIITTSTTDITSI 183
Query: 32 PPILYTS 12
I+ TS
Sbjct: 184 TMIITTS 190
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 137 STDLTSVVMLAGAKTTTIPGFRIPVSTLPTGTVPIPPILYTS 12
+TD+TS+ M+ TT I + ++T T + I I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 137 STDLTSVVMLAGAKTTTIPGFRIPVSTLPTGTVPIPPILYTS 12
+TD+TS+ M+ TT I I +T T I I+ TS
Sbjct: 8 TTDITSITMIITTSTTDITSITIITTTSTTDITSITMIITTS 49
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 137 STDLTSVVMLAGAKTTTIPGFRIPVSTLPTGTVPIPPILYTS 12
+TD+TS+ M+ TT I + ++T T I I+ TS
Sbjct: 163 TTDITSITMIITTSTTDITSITMIITTSTTDITSITMIITTS 204
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 137 STDLTSVVMLAGAKTTTIPGFRIPVSTLPTGTVPIPPILYTS 12
+TD+TS+ M+ TT I + ++T T I I+ TS
Sbjct: 177 TTDITSITMIITTSTTDITSITMIITTSTTDITSITMIITTS 218
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 137 STDLTSVVMLAGAKTTTIPGFRIPVSTLPTGTVPIPPILYTS 12
+TD+TS+ ++ TT I + ++T T I I+ TS
Sbjct: 22 TTDITSITIITTTSTTDITSITMIITTSTTDITSITMIITTS 63
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 137 STDLTSVVMLAGAKTTTIPGFRIPVSTLPTGTVPIPPILYTS 12
+TD+TS+ M+ TT I + ++T T I I+ T+
Sbjct: 36 TTDITSITMIITTSTTDITSITMIITTSTTDITSITMIITTT 77
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 137 STDLTSVVMLAGAKTTTIPGFRIPVSTLPTGTVPIPPILYTS 12
+TD+TS+ M+ TT I + ++T T I I+ T+
Sbjct: 191 TTDITSITMIITTSTTDITSITMIITTSTTDITSITMIITTT 232
>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
Length = 173
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 19 YKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGD 177
+ I G GT+ G + +G + V +T +VKS++M + + +A GD
Sbjct: 120 FSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKKPVDKASQGD 172
>SB_11954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +1
Query: 91 VVFAPANITTEVKSVEMHHE-ALQEAVPGDNVGFNVKNVSVKELRRGYVAGD----SKNN 255
VVF P NI+ + ++ A ++ +P + +KN + R GYV S+ N
Sbjct: 14 VVFDPENISVDEGMIKFKGRLAFRQYMPAKPTKYGIKNWMAADARNGYVCNFKVHLSQEN 73
Query: 256 PPR 264
P R
Sbjct: 74 PQR 76
>SB_21811| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.7e-06)
Length = 925
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Frame = -1
Query: 297 HNDLRCEVCSSPGWVVFRISC------NVTTAQFLDRYVFD 193
H ++C VC GW + R+ C + TT Q ++FD
Sbjct: 172 HRRVKCSVCKKVGWSMDRLVCETCGLRSFTTVQAFSDWLFD 212
>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
Length = 872
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +3
Query: 303 SPRSNIKRIHTCIGLPHSPHSLQICR 380
SP+ KR T GLP S HSL CR
Sbjct: 537 SPKMKKKRPKTGEGLPGSKHSLDSCR 562
>SB_35682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 155 YKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQ 274
YKK+YP T + TS + LSR E R + PGE Q
Sbjct: 132 YKKIYPSTNTLYTSLSPLSRK---PLTNECRDYSKPGEYQ 168
>SB_34860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 106 ANITTEVKSVEMHHEALQ-EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 261
A+ TT A+Q E PG ++G + + VKEL++ AG + PP
Sbjct: 49 ASATTSTTGSHQAMSAMQSEEEPGASMGHRTERLKVKELKQMKRAGLTPLRPP 101
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 457 AIVNLVPSKRLCVESFQEFPALGRFAVR 540
A V L S+ +CVE ++++ LGRF +R
Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLR 67
>SB_17484| Best HMM Match : Pox_A32 (HMM E-Value=0.025)
Length = 1616
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 368 QAMWAVWQSNTGVYPFDI*PG*FSTMTCAVKSA-APLGGLFFESPA 234
Q +AVW + G + + PG +ST + V+S+ A GG E+ A
Sbjct: 78 QLNFAVWCATAGCFTSTLPPGGYSTSSAPVRSSIAGAGGPAMEAQA 123
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 209 TDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTT 87
T +T T +P T + + ISTD T+V+ ++ A+TTT
Sbjct: 1006 TSASMTKHATAAPITTNGTTAEPISTDGTTVLSMSTARTTT 1046
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/67 (25%), Positives = 25/67 (37%)
Frame = -2
Query: 227 PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTIPGFRIPVSTLPT 48
P DT L L+ TL+P T + S + A +TT PG + + +
Sbjct: 3479 PETTDEPDTTLALETTLAPETTMATETTVASETTVTPGSTAAPETTVAPGTTVALESTVA 3538
Query: 47 GTVPIPP 27
I P
Sbjct: 3539 PETSIAP 3545
>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
Length = 177
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 13 DVYKIGGIGTVPVGRVETGILKPGIVVVFAPANI----TTEVKSVEMHHEALQEAVPGDN 180
D Y + G+GTV G GI++ ++ P + ++S+ ++E G
Sbjct: 111 DTYSVPGVGTVISGTCMKGIIRLNDTLLLGPDPLGQFQPVAIRSIHRKRMPVKEVRGGQT 170
Query: 181 VGFNVK 198
F++K
Sbjct: 171 ASFSLK 176
>SB_21621| Best HMM Match : FKBP_N (HMM E-Value=7.3)
Length = 272
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 76 KPGIVVVFAPANITTEVKSVEMHHEALQ-EAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 252
K + V A TT + + A+Q E PG ++G + KEL+ AG +
Sbjct: 86 KKAVPVASEDAIATTSITGSHLAMTAMQSEEEPGASMGHKTERKKAKELKEMKKAGLTLR 145
Query: 253 NPP 261
PP
Sbjct: 146 PPP 148
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 431 GLSSVDLPVRRSTFSL-ISANLQAMWAVWQS 342
G++++ LP ST + NLQ W +WQS
Sbjct: 2463 GITTIPLPSSSSTPIIDFEVNLQGEWILWQS 2493
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = -2
Query: 227 PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTIP-GFRIPVSTLP 51
P +T + TLSPGT + + S +A +TT P PV+TLP
Sbjct: 17 PETTVSPETTAVPETTLSPGTTAAPETTVAPETTVSPETIAEPETTVAPETTTAPVTTLP 76
Query: 50 TGTVPIP 30
+ P
Sbjct: 77 PDSTMAP 83
>SB_18605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1400
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -2
Query: 473 TRLTMAASPDLIDLGLSSV-DLPVRRSTFSLISANLQAMWAVWQSNT 336
+R+TMAA P +++ +S V +PV S L+++ + + V +N+
Sbjct: 625 SRITMAAPPAIVEKNISRVARIPVVVSNVRLLASKIDELECVSSTNS 671
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,684,529
Number of Sequences: 59808
Number of extensions: 451766
Number of successful extensions: 1488
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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