Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P11
(540 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 299 6e-82
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 299 6e-82
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 299 6e-82
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 85 3e-17
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 54 9e-08
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 52 3e-07
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 48 3e-06
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 48 3e-06
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 48 3e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 44 5e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 44 5e-05
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 37 0.008
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 37 0.008
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 37 0.008
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 33 0.17
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 31 0.70
Z81476-10|CAN86579.1| 224|Caenorhabditis elegans Hypothetical p... 30 0.93
Z81476-1|CAB03921.2| 431|Caenorhabditis elegans Hypothetical pr... 30 0.93
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 30 0.93
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 30 0.93
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 30 0.93
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 30 1.2
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 30 1.2
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 30 1.2
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical pr... 29 2.8
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 2.8
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 3.7
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 3.7
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 3.7
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 28 4.9
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 27 8.6
Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z46267-16|CAO78720.1| 576|Caenorhabditis elegans Hypothetical p... 27 8.6
Z46267-4|CAD45594.1| 517|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z46267-3|CAA86421.3| 522|Caenorhabditis elegans Hypothetical pr... 27 8.6
U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical pr... 27 8.6
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 27 8.6
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 27 8.6
U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 27 8.6
AF039037-5|AAC48228.3| 714|Caenorhabditis elegans Temporarily a... 27 8.6
AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical ... 27 8.6
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 299 bits (735), Expect = 6e-82
Identities = 138/177 (77%), Positives = 154/177 (87%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
QDVYKIGGIGTVPVGRVETGI+KPG+VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGF
Sbjct: 217 QDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGF 276
Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
NVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIAC
Sbjct: 277 NVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIAC 336
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
KF E+KEKVDRRTGK ED PK +KSGDA IV L+P+K LCVESF ++ LGRFAVR
Sbjct: 337 KFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVR 393
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 299 bits (735), Expect = 6e-82
Identities = 138/177 (77%), Positives = 154/177 (87%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
QDVYKIGGIGTVPVGRVETGI+KPG+VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGF
Sbjct: 251 QDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGF 310
Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
NVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIAC
Sbjct: 311 NVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIAC 370
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
KF E+KEKVDRRTGK ED PK +KSGDA IV L+P+K LCVESF ++ LGRFAVR
Sbjct: 371 KFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVR 427
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 299 bits (735), Expect = 6e-82
Identities = 138/177 (77%), Positives = 154/177 (87%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
QDVYKIGGIGTVPVGRVETGI+KPG+VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGF
Sbjct: 251 QDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGF 310
Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
NVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIAC
Sbjct: 311 NVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIAC 370
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
KF E+KEKVDRRTGK ED PK +KSGDA IV L+P+K LCVESF ++ LGRFAVR
Sbjct: 371 KFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVR 427
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 85.0 bits (201), Expect = 3e-17
Identities = 49/173 (28%), Positives = 87/173 (50%)
Frame = +1
Query: 22 KIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 201
K +GTV +G++E+G ++ G +V P +V + + V GDN+ F +K
Sbjct: 347 KYSEMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKG 406
Query: 202 VSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAE 381
+ EL+ G++ + G F A+V+VL H I++GY+ VL +A
Sbjct: 407 IEENELQGGFIICSPDSLAKTGRV-FDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKG 465
Query: 382 IKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
+ +D++TG+ + K +K + I+ L + +E F+E+P LGRF +R
Sbjct: 466 VIATIDKKTGE--KKRAKFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLR 516
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 53.6 bits (123), Expect = 9e-08
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Frame = +1
Query: 13 DVYKIGGIGTVPVGRVETGILKPGIVVVFAPAN----ITTEVKSVEMHHEALQEAVPGDN 180
D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G +
Sbjct: 379 DIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCGQS 438
Query: 181 VGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAH 360
F +K + K++R+G V D K P F A+++VL+HP I Y +L +
Sbjct: 439 ASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAMLHIGSVR 497
Query: 361 IACKFAEIKEKVDRRTG 411
+ ++V RTG
Sbjct: 498 QTATLVSMGKEV-LRTG 513
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 52.0 bits (119), Expect = 3e-07
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = +1
Query: 13 DVYKIGGIGTVPVGRVETGILKPGIVVVFAPAN----ITTEVKSVEMHHEALQEAVPGDN 180
D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G +
Sbjct: 380 DIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVKCGQS 439
Query: 181 VGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 342
F +K + K++R+G V D K P F A+++VL+HP I Y +L
Sbjct: 440 ASFALKKIPKKDVRQGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML 492
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 48.4 bits (110), Expect = 3e-06
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPG--IVVVFAPANITTEVKSV----EMHHEALQEAVP 171
+ VY I G GTV G++E GILK G I +V + TT VKSV E + + +A P
Sbjct: 257 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTT-VKSVISGLESFRKTVDQAEP 315
Query: 172 GDNVGFNVKNVSVKELRRGYV 234
GD +G ++ + K++RRG V
Sbjct: 316 GDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 48.4 bits (110), Expect = 3e-06
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPG--IVVVFAPANITTEVKSV----EMHHEALQEAVP 171
+ VY I G GTV G++E GILK G I +V + TT VKSV E + + +A P
Sbjct: 258 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTT-VKSVISGLESFRKTVDQAEP 316
Query: 172 GDNVGFNVKNVSVKELRRGYV 234
GD +G ++ + K++RRG V
Sbjct: 317 GDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 48.4 bits (110), Expect = 3e-06
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPG--IVVVFAPANITTEVKSV----EMHHEALQEAVP 171
+ VY I G GTV G++E GILK G I +V + TT VKSV E + + +A P
Sbjct: 258 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTT-VKSVISGLESFRKTVDQAEP 316
Query: 172 GDNVGFNVKNVSVKELRRGYV 234
GD +G ++ + K++RRG V
Sbjct: 317 GDQLGVLLRGLGPKDVRRGCV 337
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 44.4 bits (100), Expect = 5e-05
Identities = 35/177 (19%), Positives = 72/177 (40%), Gaps = 1/177 (0%)
Frame = +1
Query: 13 DVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFN 192
DV K+ V G++E+G ++ V + VK +++ + GD +
Sbjct: 399 DVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAATVKECA-NNDGSRHCFAGDYILLT 457
Query: 193 VKNVSVKE-LRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
++ E ++ G V + + + F +++ I G L H+ + C
Sbjct: 458 LQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPC 517
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
F + +++ G+ + P+ I G +A+V + + +E+F ALGR R
Sbjct: 518 TFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFR 574
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 44.4 bits (100), Expect = 5e-05
Identities = 35/177 (19%), Positives = 72/177 (40%), Gaps = 1/177 (0%)
Frame = +1
Query: 13 DVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFN 192
DV K+ V G++E+G ++ V + VK +++ + GD +
Sbjct: 417 DVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTAATVKECA-NNDGSRHCFAGDYILLT 475
Query: 193 VKNVSVKE-LRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
++ E ++ G V + + + F +++ I G L H+ + C
Sbjct: 476 LQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCVPC 535
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
F + +++ G+ + P+ I G +A+V + + +E+F ALGR R
Sbjct: 536 TFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFR 592
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 37.1 bits (82), Expect = 0.008
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITT----EVKSVEMHHEALQEAVPGD 177
+++Y + +G V G + G L G V+ P T V S+ +A+ PG+
Sbjct: 408 EELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPGE 467
Query: 178 NVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 306
++ LRRG V + + PP +FTA +++L H
Sbjct: 468 AASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLCH 509
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 37.1 bits (82), Expect = 0.008
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 25 IGGIGTVPVGRVETGILKPG--IVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVK 198
I G GTV VG +E G+LK G + + + T +++ ++++E GD+ G +
Sbjct: 250 ITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCR 309
Query: 199 NVSVKELRRGYVAG 240
V ++RG AG
Sbjct: 310 GVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 37.1 bits (82), Expect = 0.008
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 25 IGGIGTVPVGRVETGILKPG--IVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVK 198
I G GTV VG +E G+LK G + + + T +++ ++++E GD+ G +
Sbjct: 250 ITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCR 309
Query: 199 NVSVKELRRGYVAG 240
V ++RG AG
Sbjct: 310 GVKGDTVKRGMWAG 323
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 32.7 bits (71), Expect = 0.17
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Frame = -2
Query: 299 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPG-TASCRASWCISTDLT 123
ST T A+ + P ++ P + T +S + S R S +S D T
Sbjct: 4 STATVAIIQSEPSTSSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDST 63
Query: 122 SVVMLAGAKTTTIPGFR--IPVSTLPTGTVPIPPILYTSCP 6
V + +T+P + VST PT +PPI Y P
Sbjct: 64 PVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITYPPAP 104
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 30.7 bits (66), Expect = 0.70
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -2
Query: 290 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVM 111
T A +AAP GGLF + T P T T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 110 LAGAKTTTIPGFRIPVSTLPT 48
+ T+T+P P PT
Sbjct: 528 TTTSTTSTLPK---PAEATPT 545
Score = 29.1 bits (62), Expect = 2.1
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = -2
Query: 299 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS--WCISTDL 126
++ T S AP GGLF + T P + T T +P T +T
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTT 506
Query: 125 TSVVMLAGAKTTTIPGF-RIPVSTLPTGTVPIP 30
+ G +T+ +P +T T T+P P
Sbjct: 507 PATAATLGQTPSTVSATPSLPTTTSTTSTLPKP 539
Score = 27.1 bits (57), Expect = 8.6
Identities = 30/94 (31%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Frame = -2
Query: 308 G*FSTMTCAVKSAAPLGGLFFESPAT---*PRRNSL------TDTFLTLKPTLSPGTASC 156
G F + T A AAP GLF S T P SL T T + P S G
Sbjct: 387 GLFGSSTPAKTPAAPTAGLFGASSTTTTSAPATGSLFGTAPATTTATSAAPAASTGGLFG 446
Query: 155 RASWCISTDLTSVVMLAGAKTTTIPGFRIPVSTL 54
+S L GA TTT P P L
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGL 480
>Z81476-10|CAN86579.1| 224|Caenorhabditis elegans Hypothetical
protein C25F9.13 protein.
Length = 224
Score = 30.3 bits (65), Expect = 0.93
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 401 VVLVNQQRTTLNRLNLVMPPLSTWFPPSACVWSPSRNSQP 520
++L++ T L L + P + W PPS+C P+ ++ P
Sbjct: 149 LILISSLITCFLNLKLSIVPSTKWRPPSSCTMYPANSTFP 188
>Z81476-1|CAB03921.2| 431|Caenorhabditis elegans Hypothetical
protein C25F9.1 protein.
Length = 431
Score = 30.3 bits (65), Expect = 0.93
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 401 VVLVNQQRTTLNRLNLVMPPLSTWFPPSACVWSPSRNSQP 520
++L++ T L L + P + W PPS+C P+ ++ P
Sbjct: 149 LILISSLITCFFNLKLEIVPSTKWRPPSSCTMYPANSTFP 188
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 30.3 bits (65), Expect = 0.93
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 170 GTASCRASWCISTDLTSVVMLAGAKTTTIPGFRIPVSTLPTGTVPIPPIL 21
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 593
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -2
Query: 143 CISTDL-TSVVMLAGAKTTTIPGFRIPVSTLPTGTVP--IPPILYTSCP 6
CIS TS + T+P ++P+ TLP T P +PP+ T P
Sbjct: 332 CISVPAPTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 380
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 30.3 bits (65), Expect = 0.93
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 170 GTASCRASWCISTDLTSVVMLAGAKTTTIPGFRIPVSTLPTGTVPIPPIL 21
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 690
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -2
Query: 143 CISTDL-TSVVMLAGAKTTTIPGFRIPVSTLPTGTVP--IPPILYTSCP 6
CIS TS + T+P ++P+ TLP T P +PP+ T P
Sbjct: 429 CISVPAPTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 477
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 30.3 bits (65), Expect = 0.93
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 242 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TI 84
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAXSSMYTWPQTY 163
Query: 83 PGFRIP 66
PG+ P
Sbjct: 164 PGYLPP 169
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 242 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TI 84
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 83 PGFRIP 66
PG+ P
Sbjct: 164 PGYLPP 169
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 242 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TI 84
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 83 PGFRIP 66
PG+ P
Sbjct: 164 PGYLPP 169
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 342 GLPHSPHSLQICRNQRESRPSYW*INR 422
GL HSPHS N R S P ++ INR
Sbjct: 47 GLVHSPHSSFTTENLRSSDPMFFDINR 73
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -2
Query: 242 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TI 84
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 83 PGFRIP 66
PG+ P
Sbjct: 164 PGYLPP 169
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 19 YKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 195
+ I G GTV G V G+L+ + F N VK++E + + + G F V
Sbjct: 210 FAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 19 YKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 195
+ I G GTV G V G+L+ + F N VK++E + + + G F V
Sbjct: 169 FAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 227
>Z99277-6|CAB16484.1| 677|Caenorhabditis elegans Hypothetical
protein Y53C12A.1 protein.
Length = 677
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/54 (22%), Positives = 25/54 (46%)
Frame = +2
Query: 374 LPKSKRKSTVVLVNQQRTTLNRLNLVMPPLSTWFPPSACVWSPSRNSQPSVVSP 535
+P R++ + +++ R P + PP+ +WS + S P +V+P
Sbjct: 31 IPMMMRETPLSTKRERQAITPRFRRPAPKMIKTMPPTRSIWSVRKESVPLLVTP 84
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 158 CRASWCISTDLTSVVMLAGAKTTTI----PGFRIPVSTLPTGTVP 36
CR CI+T +T + + + PG+ +STLPT +P
Sbjct: 55 CRMEKCIATGMTMCKVQGNREKNKVRGYYPGYLPVISTLPTSVIP 99
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 340 LDCHTAHIACKFAEIKEKVDRRTGKSTE 423
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 340 LDCHTAHIACKFAEIKEKVDRRTGKSTE 423
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 340 LDCHTAHIACKFAEIKEKVDRRTGKSTE 423
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.9 bits (59), Expect = 4.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 72 PKAWYCCRFCP 104
P W CCRFCP
Sbjct: 872 PPQWECCRFCP 882
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 4.9
Identities = 21/74 (28%), Positives = 31/74 (41%)
Frame = -2
Query: 227 PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTIPGFRIPVSTLPT 48
P +++T + +T PT++P T++ S T A TTT P T T
Sbjct: 523 PHLSTITGSIVTSTPTMAPQTSA-------SPTTTPTHTTASQPTTTKPVVTTNSVTPST 575
Query: 47 GTVPIPPILYTSCP 6
GT +P T P
Sbjct: 576 GTTTVPVPTTTGSP 589
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 247 KNNPPRGAAD-FTAQVIVLNHP 309
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 247 KNNPPRGAAD-FTAQVIVLNHP 309
K NPP+GAAD F +V+ L+ P
Sbjct: 279 KANPPQGAADKFHVKVVTLHEP 300
>Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical
protein F45E6.2 protein.
Length = 589
Score = 27.1 bits (57), Expect = 8.6
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 97 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK--NNPPRGA 270
F P E+ S+ + QE+ + GF+ +N + R G GDS ++PP
Sbjct: 21 FPPQFDQLELDSLLYGTDESQESTSSSSFGFSDQNAGFRS-RDGGSLGDSSSDSSPPLSC 79
Query: 271 ADFT 282
A+FT
Sbjct: 80 ANFT 83
>Z46267-16|CAO78720.1| 576|Caenorhabditis elegans Hypothetical
protein F49E2.2c protein.
Length = 576
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 349 HTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKR 486
H A +A + EIKE V+++ ++ +D+ + S A + +PS R
Sbjct: 282 HAAVVAAE--EIKENVEKKVDEAVQDSRSNSTSSVATTLEDLPSSR 325
>Z46267-4|CAD45594.1| 517|Caenorhabditis elegans Hypothetical
protein F49E2.2b protein.
Length = 517
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 349 HTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKR 486
H A +A + EIKE V+++ ++ +D+ + S A + +PS R
Sbjct: 228 HAAVVAAE--EIKENVEKKVDEAVQDSRSNSTSSVATTLEDLPSSR 271
>Z46267-3|CAA86421.3| 522|Caenorhabditis elegans Hypothetical
protein F49E2.2a protein.
Length = 522
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 349 HTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKR 486
H A +A + EIKE V+++ ++ +D+ + S A + +PS R
Sbjct: 228 HAAVVAAE--EIKENVEKKVDEAVQDSRSNSTSSVATTLEDLPSSR 271
>U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical
protein F47C10.4 protein.
Length = 357
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 257 HPGELQTSQRKSLC*ITQVKYQTDTHLYWI 346
H G + ++ SLC +T Y+ +LYWI
Sbjct: 311 HNGSSRFTELLSLCTVTNKYYEDVQYLYWI 340
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 130 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 249
+++M + + A GD+ G+ + N+ ++L RG+ D +
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDER 307
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 130 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 249
+++M + + A GD+ G+ + N+ ++L RG+ D +
Sbjct: 268 AIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDER 307
>U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical
protein F37A4.3 protein.
Length = 229
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 209 TDTFLTLKPTLSPGTASCRASWCISTD 129
T FLTL+ T T C+ SWC D
Sbjct: 42 TSLFLTLQSTGPEMTNLCKKSWCDKVD 68
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 76 KPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 201
KPG + F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>AF039037-5|AAC48228.3| 714|Caenorhabditis elegans Temporarily
assigned gene nameprotein 40 protein.
Length = 714
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 52 GRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGD--NVGFNVK 198
G++ +GI + I+ A TE KSV MH +L + GD + F++K
Sbjct: 118 GKIGSGIARGHIL----SAGAFTECKSVSMHSTSLNRTIRGDYYRILFDIK 164
>AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical
protein Y55F3AM.9 protein.
Length = 379
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 376 AEIKEKVDRRTGKSTEDNPKS 438
AEI + +D+ GKSTE++P++
Sbjct: 27 AEILQSLDKSLGKSTEESPEA 47
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.135 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,088,961
Number of Sequences: 27780
Number of extensions: 326421
Number of successful extensions: 1041
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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