Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P11
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   345   2e-97
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   339   1e-95
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   235   2e-64
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   163   1e-42
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.1  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  345 bits (847), Expect = 2e-97
 Identities = 160/177 (90%), Positives = 169/177 (95%)
 Frame = +1

Query: 10  QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
           QDVYKIGGIGTVPVGRVETG+LKPG+VV FAPA +TTEVKSVEMHHEALQEAVPGDNVGF
Sbjct: 251 QDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGF 310

Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
           NVKNVSVKELRRGYVAGDSKNNPP+GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC
Sbjct: 311 NVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 370

Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
           KFA+IKEK DRR GK+TE+NPKSIKSGDAAIV LVPSK +C E+FQEFP LGRFAVR
Sbjct: 371 KFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVR 427


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  339 bits (833), Expect = 1e-95
 Identities = 158/177 (89%), Positives = 168/177 (94%)
 Frame = +1

Query: 10  QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
           QDVYKIGGIGTVPVGRVETGILKPG++V FAPA +TTEVKSVEMHHEAL EA+PGDNVGF
Sbjct: 251 QDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGF 310

Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
           NVKN+SVKELRRGYVAGDSKN PPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC
Sbjct: 311 NVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 370

Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
           KFAEIKEK DRRTGK+TE+NPKSIKSGDAAIV L P+K +CVE+FQEFP LGRFAVR
Sbjct: 371 KFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVR 427



 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 179 LSPGTASCRASWCISTDLTSVVMLAGAKTTTIPG 78
           L PG     A   ++T++ SV M   A T  +PG
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPG 305


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  235 bits (576), Expect = 2e-64
 Identities = 109/119 (91%), Positives = 114/119 (95%)
 Frame = +1

Query: 127 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 306
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PPRGAADFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 307 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSK 483
           PGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE+NPKSIKSGDAAIV L P+K
Sbjct: 61  PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  163 bits (396), Expect = 1e-42
 Identities = 76/81 (93%), Positives = 79/81 (97%)
 Frame = +1

Query: 10  QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
           QDVYKIGGIGTVPVGRVETG+LKPG+VV FAPA +TTEVKSVEMHHEALQEAVPGDNVGF
Sbjct: 194 QDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGF 253

Query: 190 NVKNVSVKELRRGYVAGDSKN 252
           NVKNVSVKELRRGYVAGDSKN
Sbjct: 254 NVKNVSVKELRRGYVAGDSKN 274


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 249  KQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSP 359
            K  TQ S  + + +     P S  +R HT  G+P  P
Sbjct: 1048 KTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVPEQP 1084


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/39 (20%), Positives = 20/39 (51%)
 Frame = -2

Query: 140 ISTDLTSVVMLAGAKTTTIPGFRIPVSTLPTGTVPIPPI 24
           + T++T+ +        ++ G  +P+++LP  +  I  I
Sbjct: 831 VVTNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSI 869


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 205 SVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPG 312
           S ++LR  ++A +   + P+G      Q++VLN  G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 176 TMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC 298
           ++ V TS + L  +  +    + R   HP EL+     S C
Sbjct: 402 SLFVETSASELVESSVLFPSLDSRDELHPRELEAVNLGSAC 442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,013
Number of Sequences: 438
Number of extensions: 3699
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)