Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P11
(540 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 282 9e-77
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 282 9e-77
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 282 9e-77
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 282 9e-77
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 111 3e-25
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 92 2e-19
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 67 8e-12
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 60 1e-09
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 52 2e-07
At1g45160.1 68414.m05177 protein kinase family protein contains ... 29 1.5
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 29 2.6
At4g27900.2 68417.m04005 expressed protein 28 3.5
At4g27900.1 68417.m04004 expressed protein 28 3.5
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica... 28 3.5
At5g13580.1 68418.m01570 ABC transporter family protein 28 4.6
At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I... 27 8.0
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 282 bits (692), Expect = 9e-77
Identities = 125/177 (70%), Positives = 154/177 (87%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
QDVYKIGGIGTVPVGRVETG++KPG+VV FAP +TTEVKSVEMHHE+L EA+PGDNVGF
Sbjct: 239 QDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGF 298
Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
NVKNV+VK+L+RGYVA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA
Sbjct: 299 NVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAV 358
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
KF+EI K+DRR+GK E PK +K+GDA +V + P+K + VE+F E+P LGRFAVR
Sbjct: 359 KFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVR 415
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 282 bits (692), Expect = 9e-77
Identities = 125/177 (70%), Positives = 154/177 (87%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
QDVYKIGGIGTVPVGRVETG++KPG+VV FAP +TTEVKSVEMHHE+L EA+PGDNVGF
Sbjct: 239 QDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGF 298
Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
NVKNV+VK+L+RGYVA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA
Sbjct: 299 NVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAV 358
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
KF+EI K+DRR+GK E PK +K+GDA +V + P+K + VE+F E+P LGRFAVR
Sbjct: 359 KFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVR 415
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 282 bits (692), Expect = 9e-77
Identities = 125/177 (70%), Positives = 154/177 (87%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
QDVYKIGGIGTVPVGRVETG++KPG+VV FAP +TTEVKSVEMHHE+L EA+PGDNVGF
Sbjct: 239 QDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGF 298
Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
NVKNV+VK+L+RGYVA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA
Sbjct: 299 NVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAV 358
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
KF+EI K+DRR+GK E PK +K+GDA +V + P+K + VE+F E+P LGRFAVR
Sbjct: 359 KFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVR 415
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 282 bits (692), Expect = 9e-77
Identities = 125/177 (70%), Positives = 154/177 (87%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 189
QDVYKIGGIGTVPVGRVETG++KPG+VV FAP +TTEVKSVEMHHE+L EA+PGDNVGF
Sbjct: 239 QDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGF 298
Query: 190 NVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 369
NVKNV+VK+L+RGYVA +SK++P +GAA+FT+QVI++NHPGQI NGY PVLDCHT+HIA
Sbjct: 299 NVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAV 358
Query: 370 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
KF+EI K+DRR+GK E PK +K+GDA +V + P+K + VE+F E+P LGRFAVR
Sbjct: 359 KFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVR 415
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 111 bits (267), Expect = 3e-25
Identities = 47/81 (58%), Positives = 62/81 (76%)
Frame = +1
Query: 298 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVP 477
+NH GQI NGYTPVLDCHT+HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTP 60
Query: 478 SKRLCVESFQEFPALGRFAVR 540
+K + VE++ +P LGRFA+R
Sbjct: 61 TKPMVVEAYSAYPPLGRFAIR 81
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 91.9 bits (218), Expect = 2e-19
Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 2/175 (1%)
Frame = +1
Query: 22 KIGGIGTVPVGRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 201
K +GTV +G+VE+G ++ G +V P +V ++ + ++ A PG+N+ +
Sbjct: 338 KFKDMGTVVMGKVESGSIREGDSLVVMPNKEQVKVVAIYCDEDKVKRAGPGENLRVRITG 397
Query: 202 VSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKF 375
+ +++ G+V S NP +F AQ+ +L + GY +L H C+
Sbjct: 398 IEDEDILSGFVLS-SIVNPVPAVTEFVAQLQILELLDNAIFTAGYKAILHIHAVVEECEI 456
Query: 376 AEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
E+K ++D +T K + +K+G A + + + +C+E F +FP LGRF +R
Sbjct: 457 IELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLR 511
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 66.9 bits (156), Expect = 8e-12
Identities = 43/163 (26%), Positives = 77/163 (47%)
Frame = +1
Query: 52 GRVETGILKPGIVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGY 231
G++E G ++PG V+ P+ ++S+E +A A GDNV ++ + ++ G
Sbjct: 488 GKLEAGAVRPGSKVMVMPSGDQGTIRSLERDSQACTIARAGDNVALALQGIDANQVMAGD 547
Query: 232 VAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTG 411
V + P A V+VL I G H A A ++ +D +TG
Sbjct: 548 VLCHP-DFPVSVATHLELMVLVLEGATPILLGSQLEFHVHHAKEAATVVKLVAMLDPKTG 606
Query: 412 KSTEDNPKSIKSGDAAIVNLVPSKRLCVESFQEFPALGRFAVR 540
+ T+ +P+ + + +A++ + +CVE+F E ALGR +R
Sbjct: 607 QPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLR 649
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 59.7 bits (138), Expect = 1e-09
Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVFAPANITTE--VKSVEMHHEALQEAVPGDNV 183
+DV+ I G GTV GRVE G +K G V T V VEM + L EA+ GDNV
Sbjct: 293 EDVFSITGRGTVATGRVERGTVKVGETVDLVGLRETRSYTVTGVEMFQKILDEALAGDNV 352
Query: 184 GFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQIS---NGYTPVLDCHT 354
G ++ + +++RG V + P + V+ G+ S GY P T
Sbjct: 353 GLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIIYVLKKEEGGRHSPFFAGYRPQFYMRT 412
Query: 355 AHIACKFAEIKEKVDRRT 408
+ K +I D +
Sbjct: 413 TDVTGKVTKIMNDKDEES 430
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 52.0 bits (119), Expect = 2e-07
Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Frame = +1
Query: 10 QDVYKIGGIGTVPVGRVETGILKPGIVVVF-----APANITTEVKSVEMHHEALQEAVPG 174
+DV+ I G GTV GR+E G++K G V + + V VEM + L G
Sbjct: 273 EDVFSIQGRGTVATGRIEQGVIKVGEEVEILGLREGGVPLKSTVTGVEMFKKILDNGQAG 332
Query: 175 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVL------NHPGQISNGYTP 336
DNVG ++ + ++++RG V +K + F A++ VL H SN Y P
Sbjct: 333 DNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEIYVLTKDEGGRHTAFFSN-YRP 389
Query: 337 VLDCHTAHIACKFAEIKEKV 396
TA I K E+ E V
Sbjct: 390 QFYLRTADITGK-VELPENV 408
>At1g45160.1 68414.m05177 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 1067
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +1
Query: 328 YTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKRLCVESF 504
Y P CH AC E++ R S +D K IK + N SK + ++SF
Sbjct: 82 YKPKYSCHPPKYACSSTTSSEEIKLRGKNSGKDEEKMIKISE---TNPPCSKSMGIKSF 137
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2
Query: 197 LTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTIP 81
L L+P+LS + C+S LT V ML+ A+TT +P
Sbjct: 426 LPLEPSLSRTLIEANETGCLSQALTVVAMLS-AETTLLP 463
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 430 PKSIKSGDAAIVNLVPSKRLCVESFQEFP 516
PKS+ SG+ + +++V K ++ F +FP
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFP 172
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 430 PKSIKSGDAAIVNLVPSKRLCVESFQEFP 516
PKS+ SG+ + +++V K ++ F +FP
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFP 172
>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q61687
Transcriptional regulator ATRX {Mus musculus}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 816
Score = 28.3 bits (60), Expect = 3.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 376 QICRLCGLCGNPIQVCIRLIF 314
++CR+CGL PI+ I ++F
Sbjct: 197 EVCRVCGLIKKPIESMIEVVF 217
>At5g13580.1 68418.m01570 ABC transporter family protein
Length = 727
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 140 ISTDLTSVVMLAGAKTTTIPGFRIPVSTLPTGTVP 36
IS ++ +++GA TTT PVST+PT P
Sbjct: 384 ISASISKGKLVSGATTTTHSSGSSPVSTIPTFANP 418
>At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV
GI:9651815 from [Arabidopsis thaliana]; identical to
cDNA DNA ligase IV, GI:9651814
Length = 1219
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = +1
Query: 400 RRTGKSTEDNP---KSIKSGDAAIVNLVPSK 483
++ +ST+DNP KS K G+ V+LVPS+
Sbjct: 610 QKESESTQDNPKVNKSSKRGEKKNVSLVPSQ 640
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.135 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,337,073
Number of Sequences: 28952
Number of extensions: 296677
Number of successful extensions: 981
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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