BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0001_P10 (482 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 199 2e-52 SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 199 2e-52 SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 28 0.85 SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces... 28 0.85 SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 27 2.0 SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 25 4.5 SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 25 6.0 >SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein S18|Schizosaccharomyces pombe|chr 3|||Manual Length = 152 Score = 199 bits (485), Expect = 2e-52 Identities = 92/121 (76%), Positives = 106/121 (87%) Frame = -3 Query: 480 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 301 SLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T Sbjct: 2 SLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTT 61 Query: 300 EEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 121 EE+E+IVTI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ HR Sbjct: 62 EELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHR 121 Query: 120 G 118 G Sbjct: 122 G 122 >SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizosaccharomyces pombe|chr 2|||Manual Length = 152 Score = 199 bits (485), Expect = 2e-52 Identities = 92/121 (76%), Positives = 106/121 (87%) Frame = -3 Query: 480 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 301 SLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T Sbjct: 2 SLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTT 61 Query: 300 EEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 121 EE+E+IVTI+ NP Q+KIP WFLNRQKDI DGK QL ++N+DSKLREDLERLKKI+ HR Sbjct: 62 EELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHR 121 Query: 120 G 118 G Sbjct: 122 G 122 >SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 2|||Manual Length = 807 Score = 27.9 bits (59), Expect = 0.85 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +3 Query: 147 FPNLHEAWSLNWKKSTGCICHQQYPFV 227 F NL+ + L W++ C C QYPF+ Sbjct: 368 FINLYHDFEL-WEQKINCFCFCQYPFL 393 >SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces pombe|chr 1|||Manual Length = 235 Score = 27.9 bits (59), Expect = 0.85 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +3 Query: 6 RTFYIFNLLLLGHTNSSTSSACGLSVLTTDTQTPVVTYP 122 RT Y+F LLGH S S+A L VLT+ + +P Sbjct: 155 RTCYLF---LLGHAKSICSAAVRLDVLTSFQYVSTLAHP 190 >SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharomyces pombe|chr 1|||Manual Length = 507 Score = 26.6 bits (56), Expect = 2.0 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = -1 Query: 269 QTPGNTKYQTGFSTDKRIL--LMANTAS*LLPI*TPSFVKIW 150 Q+PG+ + GF+ D+R L ++N+ + P P V+ W Sbjct: 459 QSPGSLETTNGFTLDERNLAFTLSNSVGHMAPSKDPQMVREW 500 >SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 762 Score = 25.4 bits (53), Expect = 4.5 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -3 Query: 420 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 328 GK+KV+ I + R+YSN+ +KA+ L Sbjct: 10 GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40 >SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 301 Score = 25.0 bits (52), Expect = 6.0 Identities = 18/67 (26%), Positives = 31/67 (46%) Frame = -3 Query: 330 LDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDL 151 L+ A TEE I++ N QY IP+ F+ +K+ + + +S +SK D Sbjct: 105 LESNATAFTEELWSLIISASQN--QYGIPEKFILEKKEEISKLKDRTEASKEESKTVTDH 162 Query: 150 ERLKKIR 130 ++ R Sbjct: 163 SNRRESR 169 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,830,797 Number of Sequences: 5004 Number of extensions: 34831 Number of successful extensions: 117 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 117 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 186042952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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