Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P10
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...   199   2e-52
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...   199   2e-52
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    28   0.85 
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    28   0.85 
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   2.0  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   4.5  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    25   6.0  

>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score =  199 bits (485), Expect = 2e-52
 Identities = 92/121 (76%), Positives = 106/121 (87%)
 Frame = -3

Query: 480 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 301
           SLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T 
Sbjct: 2   SLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTT 61

Query: 300 EEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 121
           EE+E+IVTI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ HR
Sbjct: 62  EELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHR 121

Query: 120 G 118
           G
Sbjct: 122 G 122


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score =  199 bits (485), Expect = 2e-52
 Identities = 92/121 (76%), Positives = 106/121 (87%)
 Frame = -3

Query: 480 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 301
           SLV+PD FQHILR++NTN+DGK KVMFAMT IKGVGRRY+NIV KKADID+ KRAGE T 
Sbjct: 2   SLVVPDNFQHILRLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTT 61

Query: 300 EEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 121
           EE+E+IVTI+ NP Q+KIP WFLNRQKDI DGK  QL ++N+DSKLREDLERLKKI+ HR
Sbjct: 62  EELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNVDSKLREDLERLKKIQTHR 121

Query: 120 G 118
           G
Sbjct: 122 G 122


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 147 FPNLHEAWSLNWKKSTGCICHQQYPFV 227
           F NL+  + L W++   C C  QYPF+
Sbjct: 368 FINLYHDFEL-WEQKINCFCFCQYPFL 393


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 6   RTFYIFNLLLLGHTNSSTSSACGLSVLTTDTQTPVVTYP 122
           RT Y+F   LLGH  S  S+A  L VLT+      + +P
Sbjct: 155 RTCYLF---LLGHAKSICSAAVRLDVLTSFQYVSTLAHP 190


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 269 QTPGNTKYQTGFSTDKRIL--LMANTAS*LLPI*TPSFVKIW 150
           Q+PG+ +   GF+ D+R L   ++N+   + P   P  V+ W
Sbjct: 459 QSPGSLETTNGFTLDERNLAFTLSNSVGHMAPSKDPQMVREW 500


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 420 GKRKVMFAMTAIKGVGRRYSNIVLKKADIDL 328
           GK+KV+     I  + R+YSN+  +KA+  L
Sbjct: 10  GKKKVIGNRQCILSLYRKYSNVQSRKAEDQL 40


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -3

Query: 330 LDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDL 151
           L+  A   TEE    I++   N  QY IP+ F+  +K+ +     +  +S  +SK   D 
Sbjct: 105 LESNATAFTEELWSLIISASQN--QYGIPEKFILEKKEEISKLKDRTEASKEESKTVTDH 162

Query: 150 ERLKKIR 130
              ++ R
Sbjct: 163 SNRRESR 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,830,797
Number of Sequences: 5004
Number of extensions: 34831
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)