Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P10
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 185 1e-47
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 172 1e-43
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 171 3e-43
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 58 5e-09
08_01_0035 - 262750-262962,263046-263277,263420-263627,263762-26... 32 0.28
04_04_1697 - 35454337-35454576,35454657-35454888,35455045-354552... 31 0.37
01_06_0943 + 33204112-33204136,33204703-33205743,33205786-332059... 31 0.64
01_01_0735 + 5730783-5733320 28 3.4
02_04_0114 + 19879468-19880671,19882007-19882179,19882265-198826... 28 4.5
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576... 27 6.0
01_06_0717 - 31446860-31447074,31447183-31447270,31448909-314490... 27 6.0
09_06_0179 + 21380018-21380346,21380468-21380595,21380710-213808... 27 7.9
03_05_0413 - 24002534-24002585,24003185-24003305,24003678-240038... 27 7.9
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 185 bits (451), Expect = 1e-47
Identities = 78/116 (67%), Positives = 105/116 (90%)
Frame = -3
Query: 465 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 286
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 285 IVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRG 118
++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRG 118
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 172 bits (419), Expect = 1e-43
Identities = 81/137 (59%), Positives = 108/137 (78%), Gaps = 16/137 (11%)
Frame = -3
Query: 480 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR------ 319
SL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 2 SLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVCY 61
Query: 318 ----------AGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDS 169
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD
Sbjct: 62 YLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDM 121
Query: 168 KLREDLERLKKIRAHRG 118
KLR+DLERLKKIR HRG
Sbjct: 122 KLRDDLERLKKIRNHRG 138
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 171 bits (415), Expect = 3e-43
Identities = 81/139 (58%), Positives = 108/139 (77%), Gaps = 18/139 (12%)
Frame = -3
Query: 480 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR------ 319
SL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 2 SLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPPP 61
Query: 318 ------------AGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 175
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ L
Sbjct: 62 PSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNAL 121
Query: 174 DSKLREDLERLKKIRAHRG 118
D KLR+DLERLKKIR HRG
Sbjct: 122 DMKLRDDLERLKKIRNHRG 140
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 57.6 bits (133), Expect = 5e-09
Identities = 27/42 (64%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Frame = -3
Query: 240 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRG 118
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRG 48
>08_01_0035 -
262750-262962,263046-263277,263420-263627,263762-264011,
265232-265342
Length = 337
Score = 31.9 bits (69), Expect = 0.28
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +2
Query: 188 VNWLYL-PSTISFCLLRNQSGIL-YCLGFDMIVTIFSTSSSVHSPARLSRSISAFFNTML 361
+NWLY S + ++ SG+L +CL F + I ST++ + A + A + +
Sbjct: 218 INWLYTYDSIVPALIIITTSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWM 277
Query: 362 EYRRP-TPLIAVIANITL 412
+R P + + AV ITL
Sbjct: 278 IFRNPISAMNAVGCAITL 295
>04_04_1697 -
35454337-35454576,35454657-35454888,35455045-35455252,
35455380-35455629,35456232-35456354
Length = 350
Score = 31.5 bits (68), Expect = 0.37
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +2
Query: 188 VNWLYLPSTISFCL-LRNQSGIL-YCLGFDMIVTIFSTSSSVHSPARLSRSISAFFNTML 361
V W Y +I+ L + SG+L +CL F + I ST++ + A + A + L
Sbjct: 222 VTWFYTHDSIASALVIIIGSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWL 281
Query: 362 EYRRP-TPLIAVIANITL 412
+R P +P+ A+ ITL
Sbjct: 282 IFRNPISPMNAIGCAITL 299
>01_06_0943 +
33204112-33204136,33204703-33205743,33205786-33205926,
33206205-33206245,33208250-33208346,33208599-33208836,
33208937-33209087,33209155-33209454
Length = 677
Score = 30.7 bits (66), Expect = 0.64
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 48 NSSTSSACGLSVLTTDTQTPVVTYPYEHGSSSAFPNLHEAWSLNWKKSTGCICH 209
NS+ C S +D T +V S F +L ++W L W++ + C H
Sbjct: 228 NSTNDITCTYSANPSDRMTKIVLNSTGSLSIMQFDSLEKSWILLWRQPSTCEVH 281
>01_01_0735 + 5730783-5733320
Length = 845
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 348 KKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVD 208
K AD L K E E+ K+VT M Y P+W ++ + VD
Sbjct: 672 KVADFGLSK----LIEREISKVVTRMKGTPGYMAPEWLTSQITEKVD 714
>02_04_0114 +
19879468-19880671,19882007-19882179,19882265-19882605,
19882698-19882977,19883070-19883267,19883380-19883652
Length = 822
Score = 27.9 bits (59), Expect = 4.5
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = -3
Query: 315 GECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKK 136
GE T E +V M ++Y P+ LNR +IV + L+ NL ++ ++ +
Sbjct: 652 GERTMEAARDLV--MKQVQKYFRPE-LLNRLSEIVI--FEPLSHDNLKEVVKIQMKSVVT 706
Query: 135 IRAHRGRSLLGS 100
AH+G SLL S
Sbjct: 707 SVAHKGVSLLAS 718
>02_05_1211 +
34956601-34956850,34956950-34957102,34957562-34957674,
34958092-34958198,34958289-34958404,34958502-34958577,
34958652-34958693,34958809-34958917,34959102-34959199,
34959297-34959390,34959517-34959642
Length = 427
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = -3
Query: 342 ADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDS-- 169
+ +DLD R+G T V K T+ NP + ++ + + KD Y +LT+ N ++
Sbjct: 190 SSVDLDIRSGSNTRHVVLKRQTVTLNPVRSRMCE--IPGAKDNSKVGYIKLTTFNQNAAG 247
Query: 168 KLREDLERLKK 136
++E L++L++
Sbjct: 248 SVKEALQKLRE 258
>01_06_0717 - 31446860-31447074,31447183-31447270,31448909-31449012,
31449618-31449745,31450461-31450555,31461823-31463115,
31463188-31464039,31464568-31464621
Length = 942
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -3
Query: 303 EEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLR-EDLERLKKIRA 127
E+ V +I+ ++ R + PD L +KD + L K R E++ERL+K R
Sbjct: 849 EKRVNEIINRLNKTRVERRPD--LKAEKDASNAAEKAERKMQLKEKRRREEMERLEKERR 906
Query: 126 HRGRSLLG 103
RS G
Sbjct: 907 AEIRSYKG 914
>09_06_0179 +
21380018-21380346,21380468-21380595,21380710-21380853,
21380938-21381086,21381226-21381361,21381583-21381679,
21382056-21382156,21382354-21382466,21382865-21382936,
21382970-21383161,21383249-21383344,21383463-21383615
Length = 569
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Frame = +2
Query: 203 LPSTISFCLLRNQSGILYC----LGFDMIVTIFSTS--SSVHSPARLSRSISA 343
LPS S LL G++ LG +++++I S S++HSPA+L S+ A
Sbjct: 214 LPSISSAILLAAAIGVIEASALILGSEILLSIMGVSHASTMHSPAKLFLSLRA 266
>03_05_0413 -
24002534-24002585,24003185-24003305,24003678-24003871,
24005359-24005651
Length = 219
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 207 GKYSQLTSSNLDSKLREDLERLKKIRAHRGRSLLGSACPWST 82
G + QL SN KLR+DLE + G +L PW T
Sbjct: 166 GSHQQLKESN---KLRDDLEYVPTYEDKDGDWMLVGDVPWDT 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,481,109
Number of Sequences: 37544
Number of extensions: 214213
Number of successful extensions: 634
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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