Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P10
(482 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C) 188 1e-48
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi... 188 1e-48
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc... 188 1e-48
At1g21870.1 68414.m02737 glucose-6-phosphate/phosphate transloca... 32 0.18
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 28 2.9
At3g17200.1 68416.m02194 hypothetical protein 28 3.8
At5g61260.1 68418.m07687 chromosome scaffold protein-related con... 27 6.6
At5g50650.1 68418.m06276 WD-40 repeat family protein / St12p pro... 27 6.6
At5g50550.1 68418.m06260 WD-40 repeat family protein / St12p pro... 27 6.6
At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containi... 27 6.6
>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
Length = 152
Score = 188 bits (459), Expect = 1e-48
Identities = 82/121 (67%), Positives = 107/121 (88%)
Frame = -3
Query: 480 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 301
SLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 2 SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 61
Query: 300 EEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 121
E++ ++TI++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HR
Sbjct: 62 AEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 121
Query: 120 G 118
G
Sbjct: 122 G 122
>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
to ribosomal protein S18 GI:38422 from [Homo sapiens]
Length = 152
Score = 188 bits (459), Expect = 1e-48
Identities = 82/121 (67%), Positives = 107/121 (88%)
Frame = -3
Query: 480 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 301
SLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 2 SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 61
Query: 300 EEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 121
E++ ++TI++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HR
Sbjct: 62 AEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 121
Query: 120 G 118
G
Sbjct: 122 G 122
>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
gb|R30430 come from this gene
Length = 152
Score = 188 bits (459), Expect = 1e-48
Identities = 82/121 (67%), Positives = 107/121 (88%)
Frame = -3
Query: 480 SLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTE 301
SLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 2 SLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSA 61
Query: 300 EEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHR 121
E++ ++TI++NPRQ+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+DLERLKKIR HR
Sbjct: 62 AEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHR 121
Query: 120 G 118
G
Sbjct: 122 G 122
>At1g21870.1 68414.m02737 glucose-6-phosphate/phosphate
translocator-related similar to glucose 6
phosphate/phosphate translocators from Pisum sativum]
GI:2997591, [Mesembryanthemum crystallinum] GI:9295277,
[Solanum tuberosum] GI:2997593; contains Pfam profile
PF00892: Integral membrane protein
Length = 341
Score = 32.3 bits (70), Expect = 0.18
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 206 PSTISFCLLRNQSGIL-YCLGFDMIVTIFSTSSSVHSPARLSRSISAFFNTMLEYRRP-T 379
PS S ++ SG+L +CL F + I ST++ + A + A F + + +R P +
Sbjct: 226 PSPWSALIILFNSGVLAFCLNFSIFYVIQSTTAVTFNVAGNLKVAVAVFVSWMIFRNPIS 285
Query: 380 PLIAVIANITL 412
P+ AV ITL
Sbjct: 286 PMNAVGCGITL 296
>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 351
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 207 GKYSQLTSSNLDSKLREDLERLKKIRAHRGRSL 109
G YS + NLD+ L+R+KK+ A G L
Sbjct: 26 GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGERL 58
>At3g17200.1 68416.m02194 hypothetical protein
Length = 310
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +3
Query: 42 HTNSSTSSACGLSVLTTDTQTPVVTYPYEHGSSSAFPNLHEAWSLNWKKSTGCICHQ 212
H N+S S C + T D V TY + A P L +SL+WK +C +
Sbjct: 177 HVNTSCS-LCDEPMETRDHLFFVCTYSRKVWEDIAKPILQHRFSLDWKDILNYVCER 232
>At5g61260.1 68418.m07687 chromosome scaffold protein-related
contains weak similarity to chromosome scaffold protein
p85 [Moneuplotes crassus] gi|25990101|gb|AAN75020
Length = 496
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -3
Query: 213 VDGKYSQLTSSNLDSKLREDLERLKKIRAHRGRSLLGS 100
V+GK +T N + + E + +L K+R H+ ++L+G+
Sbjct: 426 VEGKKKMITLFN--NVIEETVNKLTKVRKHKVKALIGA 461
>At5g50650.1 68418.m06276 WD-40 repeat family protein / St12p
protein, putative contains 4 WD-40 repeats (PF0400);
similar to St12p protein GI:166878 [Arabidopsis
thaliana]
Length = 383
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 42 HTNSSTSSACGLSVLTTDTQTPVVTYPYEHGSSSAFPN 155
HTNS + G V+ TD + +P + G A PN
Sbjct: 76 HTNSLSEQPIGRRVIGTDLPYRMAIHPRQGGLICALPN 113
>At5g50550.1 68418.m06260 WD-40 repeat family protein / St12p
protein, putative contains 4 WD-40 repeats (PF0400);
similar to St12p protein GI:166878 [Arabidopsis
thaliana]
Length = 383
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 42 HTNSSTSSACGLSVLTTDTQTPVVTYPYEHGSSSAFPN 155
HTNS + G V+ TD + +P + G A PN
Sbjct: 76 HTNSLSEQPIGRRVIGTDLPYRMAIHPRQGGLICALPN 113
>At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 657
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 207 GKYSQLTSSNLDSKLREDLERLKKIRAHRGRSLLGSAC 94
G Y L ++++ ++++R+KK+ HRG L C
Sbjct: 489 GNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRC 526
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,465,408
Number of Sequences: 28952
Number of extensions: 179192
Number of successful extensions: 593
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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