Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P09
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...   122   2e-29
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...   120   7e-29
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   2.2  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   2.2  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   3.8  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   3.8  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   3.8  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   5.0  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   6.7  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    24   6.7  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score =  122 bits (294), Expect = 2e-29
 Identities = 54/93 (58%), Positives = 71/93 (76%)
 Frame = +2

Query: 92  IVKKRTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 271
           I+KKRTK F RHQSDR+ ++  +WRKP GID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 272 SGFRKVLVHNVRELEILMMQNRKYCAEIAHGVS 370
           +G +  LV NV ++E+L+M N+ Y AEIA  VS
Sbjct: 66  NGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVS 98


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score =  120 bits (289), Expect = 7e-29
 Identities = 54/93 (58%), Positives = 70/93 (75%)
 Frame = +2

Query: 92  IVKKRTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 271
           IVKKRTK F RHQSD + ++  +WRKP GID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 272 SGFRKVLVHNVRELEILMMQNRKYCAEIAHGVS 370
           +G +  LV NV ++E+L+M N+ Y AEIA  VS
Sbjct: 66  NGLKAFLVRNVSDVELLLMHNKTYAAEIASNVS 98


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 131 SDRYDKLKRN-WRKPTGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVR 307
           + R D++  N  RK  G+  +    F    L  NIGYG+ K +   +    +K  +H++ 
Sbjct: 504 NQRLDQITLNSLRKAIGVVPQDTPLFNDTILY-NIGYGNPKASNDEIVEAAKKAKIHDII 562

Query: 308 E 310
           E
Sbjct: 563 E 563


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 214 LTLEAPTYSVVDTCRFTPVPLKFIITIRLVTNKSFRPLF 98
           +T+ A  Y V+ +         +I+T  L+TN +F+PL+
Sbjct: 48  MTIVASLYPVIGSEFKLMNNASYIVTAYLITNTAFQPLY 86


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 83  RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNI 232
           R T VK+R K  I+  S+    +     KP G   R R+  K  Y +P +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALPGL 587


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 116 FIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYG 241
           F  H  D YD+L  NW++   ++    +RFK      NI  G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -3

Query: 133 RLVTNKSFRPLFDDCRSVNRSDS---HFKLFH*E 41
           R++ ++++RPL DD   + R  S   H KL H E
Sbjct: 385 RIINHENYRPLMDDIEILLRDQSFVGHPKLEHLE 418


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +3

Query: 270 PAVFVKSWSTTFANWR---S**CRTGNTARKSHM 362
           P   V +W  T ANW    +  C TGNT  ++++
Sbjct: 447 PLSTVPAWQETLANWTPDLNSICYTGNTESRANI 480


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 317 SPVRERCGPRLYENRWVACDGSSY-LNHNQCWASS 216
           SP RE C     + +  AC+G+S+ L H    ASS
Sbjct: 28  SPEREYCSDCPLQAKGSACNGNSHSLKHETNGASS 62


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 211 TLEAPTYSVVDTCRFTPVPLKFIITIRL-VTNKSFRPLFDD 92
           TL     SV+  CRF   P   +I IR+ +T  S RP+F +
Sbjct: 20  TLAGGISSVI--CRFMIAPFD-VIKIRMQITQSSLRPVFKE 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,545,301
Number of Sequences: 5004
Number of extensions: 29923
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)