Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P09
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 144 1e-35
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 144 1e-35
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 125 1e-29
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 118 1e-27
02_02_0355 + 9312814-9313650 29 0.88
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764 27 6.2
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666... 27 6.2
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 26 8.2
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 144 bits (350), Expect = 1e-35
Identities = 69/103 (66%), Positives = 81/103 (78%)
Frame = +2
Query: 62 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYG 241
MA+ P+ IVKKR K+F R SDRY LK +WR+P GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 242 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVS 370
S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVS 102
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 144 bits (350), Expect = 1e-35
Identities = 69/103 (66%), Positives = 81/103 (78%)
Frame = +2
Query: 62 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYG 241
MA+ P+ IVKKR K+F R SDRY LK +WR+P GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 242 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVS 370
S+KKTRH LP+ F+K +VHNV ELE+LMM NR YCAEIAH VS
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVS 102
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 125 bits (302), Expect = 1e-29
Identities = 59/94 (62%), Positives = 73/94 (77%)
Frame = +2
Query: 56 FKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIG 235
++M + P+ IVKKR K+F R SDRY LK +WR+P GID+RVRR+FKG LMPNIG
Sbjct: 321 YEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIG 379
Query: 236 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 337
YGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 380 YGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 118 bits (285), Expect = 1e-27
Identities = 52/71 (73%), Positives = 61/71 (85%)
Frame = +2
Query: 158 NWRKPTGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNR 337
+WR+P GID+RVRR+FKG LMPNIGYGS+KKTRH LP+ F+K +VHNV ELE+LMM NR
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 338 KYCAEIAHGVS 370
YCAEIAH VS
Sbjct: 159 TYCAEIAHNVS 169
Score = 29.9 bits (64), Expect = 0.67
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +2
Query: 62 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 154
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>02_02_0355 + 9312814-9313650
Length = 278
Score = 29.5 bits (63), Expect = 0.88
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 220 DAQHWLWFK*EDPSHATQRFS*SLGPQRSRTGDPDDAEQEILRGNRTW 363
D+Q WL +D HA P+ GD D + E R R W
Sbjct: 3 DSQQWLHGDGDDVEHAAAMTMTEAAPRDDEPGDRRDVDDENERRQRRW 50
>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
Length = 515
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 275 RWVACDGSSYLNHNQC 228
RW+ CDG S+ H C
Sbjct: 209 RWIGCDGCSHWTHAGC 224
>10_08_0371 +
17265691-17265788,17265873-17265971,17266586-17266628,
17267250-17267321,17267400-17267495,17267609-17267842,
17267914-17268097,17268247-17268358,17268447-17268533,
17268703-17268841,17269628-17269718,17270045-17270154,
17270309-17270413,17270982-17271055,17271379-17271454,
17271786-17272022,17272419-17272490,17273082-17273153,
17273240-17273304,17273306-17273383,17273384-17273486,
17273769-17273858,17274873-17274980,17275063-17275113,
17276126-17276203,17276284-17276346,17276944-17277140,
17277243-17277312,17277640-17277828
Length = 1030
Score = 26.6 bits (56), Expect = 6.2
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +3
Query: 177 VSTTEYVGASRVNT*-CPTLVMVQIRRPVTCYPAVFVKSW---STTFANWRS**CRTGNT 344
V+ T Y G + T C L+ +RR TC V + SW + FA+ RS TG
Sbjct: 607 VALTTYQGEIELQTLTCQKLLATVVRRKHTCTYVVQLDSWRDLTRAFASGRSLFSLTGRL 666
Query: 345 AR 350
R
Sbjct: 667 QR 668
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 221 MPNIGYGSNKKTRHMLPSGFRKVLVHNVRELE 316
M GYG+ +++RH L G K +V LE
Sbjct: 778 MKERGYGNRRRSRHRLTPGTVKFAAFHVLSLE 809
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,278,850
Number of Sequences: 37544
Number of extensions: 199351
Number of successful extensions: 514
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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