Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P09
         (372 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             168   1e-42
SB_43660| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_41874| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)                   27   4.9  
SB_33336| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_50107| Best HMM Match : SpoVT_AbrB (HMM E-Value=6.1)                27   6.4  
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               27   6.4  
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               27   6.4  
SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_32664| Best HMM Match : PetG (HMM E-Value=3.8)                      26   8.5  
SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)                 26   8.5  
SB_16464| Best HMM Match : Clathrin (HMM E-Value=1.6)                  26   8.5  
SB_15721| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.5  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  168 bits (409), Expect = 1e-42
 Identities = 74/101 (73%), Positives = 86/101 (85%)
 Frame = +2

Query: 68  IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYGSN 247
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 248 KKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVS 370
           KKTR ++P GF+K +VHNV+ELE+LMM NR Y AEIAH VS
Sbjct: 62  KKTRFLMPDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVS 102


>SB_43660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = -3

Query: 304 NVVDQDFTKTAG*HVTGLLI*TITNVGHQVLTLEAPTYSVVDTCRFT-PVPLKFIITIRL 128
           N  D D+    G  +T +   T+T +    +T    T ++  T   T  + +    TI  
Sbjct: 2   NSYDHDYEFELGTPITTITTITVTTITVTTITTTITTITITTTTTITITITITITTTITT 61

Query: 127 VTNKSFRPLFDDCR 86
           +T  +  PL   CR
Sbjct: 62  ITTTTGDPLESTCR 75


>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = -3

Query: 328 HHQDLQFANVVDQDFTKTAG*HVTGLLI*TITNVGHQVLTLEAPTY--SVVDTCRFT-PV 158
           HH   QFA     +   T G   T  +   IT  G ++ TL   ++  + V T +FT P+
Sbjct: 501 HHITFQFAGAPRPEIHTTNGNTTTTSVFAPITTSGPRISTLPVGSHLTNGVQTMQFTRPM 560

Query: 157 PLKFIITI-RLVTNKSFRPL 101
             +F   I +LV   +F PL
Sbjct: 561 TTEFTQPIMKLVAPATFLPL 580


>SB_33814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = -3

Query: 328 HHQDLQFANVVDQDFTKTAG*HVTGLLI*TITNVGHQVLTLEAPTY--SVVDTCRFT-PV 158
           HH   QFA     +   T G   T  +   IT  G ++ TL   ++  + V T +FT P+
Sbjct: 190 HHITFQFAGAPRPEIHTTNGNTTTTSVFAPITTSGPRISTLPVGSHLTNGVQTMQFTRPM 249

Query: 157 PLKFIITI-RLVTNKSFRPL 101
             +F   I +LV   +F PL
Sbjct: 250 TTEFTQPIMKLVAPATFLPL 269


>SB_41874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 272 WVACDGSSY-LNHNQCWASSIDP*SAYVL 189
           W+AC G++Y  ++++C  S +D  S Y++
Sbjct: 99  WIACHGATYAYDNSECRVSGMDHLSRYII 127


>SB_42893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -2

Query: 359  VRFPRSISCSASSGSPVRERCGPRLYEN 276
            V  PRS+  + S+GSP+R + G RL EN
Sbjct: 923  VAIPRSLRFTWSTGSPIR-KSGRRLSEN 949


>SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)
          Length = 671

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 8   AAVSPRGSLPRFLVK*FKMAIRPVY--RPTIVKKRTKRFIRHQSDRYDKLKRNWRK 169
           A   P GS PRFL      A    +  R T+++  T     HQ  +YD ++++ RK
Sbjct: 540 APALPEGSFPRFLNTFIAHACGKCHNHRETVIEYITSNIQSHQPSQYD-VRKSIRK 594


>SB_33336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 253 DPSHATQRFS*SLGPQRSRTGDPDDAEQE 339
           D  H  +R S  + PQ   TG P  AE E
Sbjct: 97  DQRHLEKRMSLMMAPQADTTGSPGGAEHE 125


>SB_50107| Best HMM Match : SpoVT_AbrB (HMM E-Value=6.1)
          Length = 677

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 81  TDRQSSKRGRKDLFVTSRIVMINLRGTG 164
           T R SS   +K+ FVT+  V + LRG G
Sbjct: 97  TKRLSSNHFKKNSFVTASSVALELRGDG 124


>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 267

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 104 RTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMP 226
           R  R  R +S + +  KRN ++ TG++N  + R   +Y  P
Sbjct: 109 RQDRESRAESSKDEGSKRNTKQGTGLENAEKPRIVNRYSEP 149


>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 494

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 104 RTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMP 226
           R  R  R +S + +  KRN ++ TG++N  + R   +Y  P
Sbjct: 109 RQDRESRAESSKDEGSKRNTKQGTGLENAEKPRIVNRYSEP 149


>SB_44204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 78 TGLIAILNYFTKKRGSEPRG 19
          TG++ I NY +K+RG+E  G
Sbjct: 17 TGVVLIENYASKERGNEEEG 36


>SB_32664| Best HMM Match : PetG (HMM E-Value=3.8)
          Length = 192

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 78 TGLIAILNYFTKKRGSEPRG 19
          TG++ I NY +K+RG+E  G
Sbjct: 17 TGVVLIENYASKERGNEEEG 36


>SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)
          Length = 342

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 371 RRRHVRFPRSISCSASSGSPVRERCGPRLYENRW 270
           RRR    P SI+ S  + + V E CG  L  N W
Sbjct: 81  RRRTFLAPCSINTSQRTSTNVLEPCGKSLSLNSW 114


>SB_16464| Best HMM Match : Clathrin (HMM E-Value=1.6)
          Length = 482

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 356 RFPRSISCSASSGSPVRERCGPRL 285
           R P+S  CS+ + S + + C PRL
Sbjct: 33  RSPKSSRCSSVAWSDIEQGCSPRL 56


>SB_15721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 341 ISCSASSGSPVRERCGPRLYENRWVAC 261
           I    S G  V ++  P+L +N WV+C
Sbjct: 119 IRMEPSRGHLVHDQADPKLEDNMWVSC 145


>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 176 GIDNRVRRRFKGQYLMPNIGYG-SNKKTRHMLPSGFRKV 289
           GI+N +R  FKG +L+   G G    K R   P G  KV
Sbjct: 123 GIENGLRYNFKGHFLVDTKGAGPGTLKIRIHGPKGAFKV 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,905,357
Number of Sequences: 59808
Number of extensions: 234775
Number of successful extensions: 685
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)