Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P09
(372 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 128 1e-30
U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical pr... 30 0.61
U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical pr... 30 0.61
AL132848-1|CAB60388.2| 381|Caenorhabditis elegans Hypothetical ... 30 0.61
AL117204-12|CAB55127.1| 385|Caenorhabditis elegans Hypothetical... 27 5.7
AC024763-9|AAU20836.1| 404|Caenorhabditis elegans Hypothetical ... 27 5.7
AC024763-8|AAK93863.1| 480|Caenorhabditis elegans Hypothetical ... 27 5.7
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr... 26 7.5
U41554-1|AAA83296.2| 556|Caenorhabditis elegans Hypothetical pr... 26 9.9
U22831-13|AAM98013.1| 245|Caenorhabditis elegans G-protein-link... 26 9.9
U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-link... 26 9.9
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 26 9.9
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 26 9.9
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 26 9.9
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 26 9.9
AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-lin... 26 9.9
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 128 bits (309), Expect = 1e-30
Identities = 54/93 (58%), Positives = 76/93 (81%)
Frame = +2
Query: 92 IVKKRTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 271
+VKK+ +F RH+SDRY ++ +WRKP GIDNRVRRRF+G MP IG+GS+++TR +LP
Sbjct: 11 VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70
Query: 272 SGFRKVLVHNVRELEILMMQNRKYCAEIAHGVS 370
+G++KVLV NV++L++L+MQ+ KY EI HGVS
Sbjct: 71 NGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVS 103
>U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical
protein C14F11.4a protein.
Length = 345
Score = 29.9 bits (64), Expect = 0.61
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 80 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYGSNKK 253
Y P + KK +RFI ++R+D + RN PT R + + Q L+ + Y S+ +
Sbjct: 4 YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60
Query: 254 TRHML 268
+ L
Sbjct: 61 AEYQL 65
>U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical
protein C14F11.4b protein.
Length = 341
Score = 29.9 bits (64), Expect = 0.61
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 80 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYGSNKK 253
Y P + KK +RFI ++R+D + RN PT R + + Q L+ + Y S+ +
Sbjct: 4 YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60
Query: 254 TRHML 268
+ L
Sbjct: 61 AEYQL 65
>AL132848-1|CAB60388.2| 381|Caenorhabditis elegans Hypothetical
protein Y47H10A.2 protein.
Length = 381
Score = 29.9 bits (64), Expect = 0.61
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +2
Query: 212 QYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQN 334
QYLM NI R PSGF K L+ + L+I QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253
>AL117204-12|CAB55127.1| 385|Caenorhabditis elegans Hypothetical
protein Y116A8C.21 protein.
Length = 385
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 213 NT*CPTLVMVQIRRPVTCYPAVFVKSWSTTFANWRS**CRTG 338
N+ CP IRRPV +SWS T W + C+ G
Sbjct: 101 NSTCPAFPETDIRRPVN-------ESWSKTENGWTTRLCKNG 135
>AC024763-9|AAU20836.1| 404|Caenorhabditis elegans Hypothetical
protein Y39A3CL.7b protein.
Length = 404
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 65 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRR 199
A RP +P K+R RF+ S R+++ R P + +R R
Sbjct: 295 AERPA-KPNKEKERGDRFLPEPSRRFNRFNHRNRSPPSLSSRTSR 338
>AC024763-8|AAK93863.1| 480|Caenorhabditis elegans Hypothetical
protein Y39A3CL.7a protein.
Length = 480
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 65 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRR 199
A RP +P K+R RF+ S R+++ R P + +R R
Sbjct: 371 AERPA-KPNKEKERGDRFLPEPSRRFNRFNHRNRSPPSLSSRTSR 414
>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical
protein C18H2.5 protein.
Length = 1139
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 236 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKY 343
+ NK+ + +L H VREL+ L M+ RKY
Sbjct: 604 FNENKQVKEFWSGSPGYLLEHVVRELDNLNMEARKY 639
>U41554-1|AAA83296.2| 556|Caenorhabditis elegans Hypothetical
protein F57C12.2 protein.
Length = 556
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 186 TEYVGASRVNT*CPTLVMVQIRR-PVTCYPAVFVKSWSTTFAN 311
TE + +R C + +++ P T Y F K+WS F N
Sbjct: 399 TEVIKCNRTIMCCQIALNFKMKYLPTTVYDHTFFKAWSIVFQN 441
>U22831-13|AAM98013.1| 245|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform d protein.
Length = 245
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 114 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 25
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
>U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform b protein.
Length = 614
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 114 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 25
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 114 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 25
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 114 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 25
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 114 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 25
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 114 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 25
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
>AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-2c protein.
Length = 614
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 114 LFVLFLTIVGL*TGLIAILNYFTKKRGSEP 25
LF+LFL+IV + L +L+Y+ K +P
Sbjct: 10 LFMLFLSIVTVIGNLAVLLSYYLDKNIRQP 39
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,654,066
Number of Sequences: 27780
Number of extensions: 170249
Number of successful extensions: 439
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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