Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P09
(372 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B) 145 9e-36
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B) 145 9e-36
At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo... 145 9e-36
At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family prot... 28 2.3
At1g17340.1 68414.m02113 phosphoinositide phosphatase family pro... 28 2.3
At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domai... 27 3.0
At5g51490.1 68418.m06386 pectinesterase family protein contains ... 27 5.3
At3g03660.1 68416.m00369 homeobox-leucine zipper transcription f... 26 7.0
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 26 7.0
At1g32760.1 68414.m04039 glutaredoxin family protein contains Pf... 26 7.0
At1g19690.1 68414.m02455 expressed protein similar to (SP:P76370... 26 7.0
At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR... 26 9.2
At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR... 26 9.2
At4g16890.1 68417.m02549 disease resistance protein (TIR-NBS-LRR... 26 9.2
At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR... 26 9.2
At3g02050.1 68416.m00168 potassium transporter (KUP3) nearly ide... 26 9.2
At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit, ... 26 9.2
>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 145 bits (351), Expect = 9e-36
Identities = 65/103 (63%), Positives = 82/103 (79%)
Frame = +2
Query: 62 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYG 241
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 242 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVS 370
S+KKTRH LP+GF+K +VHN ELE+LMM NR YCAEIAH +S
Sbjct: 60 SDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNIS 102
>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 145 bits (351), Expect = 9e-36
Identities = 65/103 (63%), Positives = 82/103 (79%)
Frame = +2
Query: 62 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYG 241
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 242 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVS 370
S+KKTRH LP+GF+K +VHN ELE+LMM NR YCAEIAH +S
Sbjct: 60 SDKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNIS 102
>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
ribosomal protein L32, human, PIR1:R5HU32
Length = 133
Score = 145 bits (351), Expect = 9e-36
Identities = 66/103 (64%), Positives = 82/103 (79%)
Frame = +2
Query: 62 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYG 241
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 242 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVS 370
S+KKTRH LP+GF+K +VHN ELE+LMM NR YCAEIAH VS
Sbjct: 60 SDKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVS 102
>At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family protein
similar to Anther-specific proline-rich proteins
SP|P40603 SP|P40602 from {Arabidopsis thaliana};
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase
Length = 385
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 119 IRHQSDRYDKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYGSN 247
+R Q D Y K++R WR G + +R + YL I GSN
Sbjct: 146 LRTQLDHYKKVERLWRTNFGKEESKKRISRAVYL---ISIGSN 185
>At1g17340.1 68414.m02113 phosphoinositide phosphatase family
protein contains similarity to phosphoinositide
phosphatase SAC1 [Rattus norvegicus]
gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
SacI homology domain; identical to cDNA SAC domain
protein 5 (SAC5) GI:31415726
Length = 785
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 372 EETPCAISAQYFLFCIIRISSSRTLWTKTLRKPLGSM*RV 253
++T C++S + F+F II S T+ LR+ + + RV
Sbjct: 226 QQTKCSVSGEKFVFTIIARRSRHYAGTRYLRRGVNDIGRV 265
>At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 423
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 242 SNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGV 367
S K L SG RKV + + REL++ + ++R+ C + + V
Sbjct: 246 SKKSALASLKSGHRKVALRHARELKV-VTESREKCTSLLNRV 286
>At5g51490.1 68418.m06386 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 536
Score = 26.6 bits (56), Expect = 5.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 63 WLSDLFTDRQSSKRGRKDLFVTSRIVMINLRGTGVNRQVS 182
WLS T+ ++ +RG DL VT I I + T ++ +S
Sbjct: 140 WLSTALTNTETCRRGSSDLNVTDFITPI-VSNTKISHLIS 178
>At3g03660.1 68416.m00369 homeobox-leucine zipper transcription
factor family protein similar to to PRESSED FLOWER
(GP:17907768) {Arabidopsis thaliana}
Length = 199
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 365 RHVRFPRSISCSASSGSPVRERCGPR 288
RH R P S + ++S PVR R P+
Sbjct: 12 RHSRSPPSSASGSTSAEPVRSRWSPK 37
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 107 TKRFIRHQSDRY-DKLKRNWRKPTGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFR 283
+++ I + ++Y DK+K ++ K + N +R R+ ++ + Y RH+L + +
Sbjct: 216 SRKLIDYVENKYVDKVKEDFGKCVSVANNLRWRYWKCHICSQVYYCFTDCQRHILDNHVQ 275
Query: 284 K 286
K
Sbjct: 276 K 276
>At1g32760.1 68414.m04039 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 314
Score = 26.2 bits (55), Expect = 7.0
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -3
Query: 181 DTCRFTPVPLK 149
DTCRF+P+P+K
Sbjct: 105 DTCRFSPIPVK 115
>At1g19690.1 68414.m02455 expressed protein similar to (SP:P76370)
Protein yeeZ precursor. {Escherichia coli O157:H7}
Length = 352
Score = 26.2 bits (55), Expect = 7.0
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 205 EAPTYSVVDTCRFTPVPLKFIITIRLVTNKSFRPL--FDDCRS 83
+ P+ S RFTP PLKF R+ FRPL DD RS
Sbjct: 5 QLPSLSPEIPFRFTPTPLKFSNRRRI---NFFRPLSATDDSRS 44
>At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.; closest
homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
Length = 1404
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 363 PCAISAQYFLFCIIRISSSRTLWTKTLRKPLGSM 262
P A+Y + I++ S LW TL PLGS+
Sbjct: 590 PSTFKAEYLVNLIMKYSKLEKLWEGTL--PLGSL 621
>At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.; closest
homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
Length = 1449
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 363 PCAISAQYFLFCIIRISSSRTLWTKTLRKPLGSM 262
P A+Y + I++ S LW TL PLGS+
Sbjct: 590 PSTFKAEYLVNLIMKYSKLEKLWEGTL--PLGSL 621
>At4g16890.1 68417.m02549 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1301
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 363 PCAISAQYFLFCIIRISSSRTLWTKTLRKPLGSM 262
P A+Y + I++ S LW TL PLGS+
Sbjct: 584 PSTFKAEYLVNLIMKYSKLEKLWEGTL--PLGSL 615
>At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1147
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 363 PCAISAQYFLFCIIRISSSRTLWTKTLRKPLGSM 262
P A+Y + I++ S LW TL PLGS+
Sbjct: 601 PSTFKAEYLVNLIMKYSKLEKLWEGTL--PLGSL 632
>At3g02050.1 68416.m00168 potassium transporter (KUP3) nearly
identical to potassium transporter KUP3p [Arabidopsis
thaliana] gi|6742169|gb|AAF19432; similar to tiny root
hair 1 protein [Arabidopsis thaliana]
gi|11181958|emb|CAC16137; KUP/HAK/KT Transporter family
member, PMID:11500563
Length = 789
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 371 RRRHVRFPRSISCSASSGSPVRE 303
RRRHVRF + S S GS VRE
Sbjct: 698 RRRHVRFQLTAS-SGGMGSSVRE 719
>At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit,
putative similar to cellulose synthase-1 [gi:9622874]
and -2 [gi:9622876] from Zea mays
Length = 1065
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 106 PLFDDCRSVNRSDSHFKLFH*E 41
P ++D RS+ RSDS+ LF+ E
Sbjct: 662 PNYEDNRSIKRSDSNVPLFNME 683
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,222,048
Number of Sequences: 28952
Number of extensions: 159518
Number of successful extensions: 487
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -