Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P08
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   1.5  
SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    25   2.6  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   3.4  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    24   5.9  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    24   5.9  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    24   5.9  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    23   7.9  
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    23   7.9  

>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 99  LPGVYASFPLFSYCLSIVSFLWVLD 173
           LP  Y  FP FSYCL + +FL V +
Sbjct: 390 LPLTY--FPSFSYCLELQNFLPVFN 412


>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 255 SRHRAPRSVHRAVCARPYIDHYDILLMCRVPIKMKQ*KDNRKTMESWRKRREGA 94
           + H   +  HR    RP    YD L       +  Q   NR T+E+ R+ +  A
Sbjct: 8   TNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQAKASA 61


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 46  KRSKYVEIRDLLLTPLSTFPAFTPAFHCF 132
           K+ KYV I    L  LS  P F   F+ F
Sbjct: 139 KKEKYVNIEKEALCILSKHPGFIKLFYTF 167


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 93  EHLPGVYASFPLFSYCLSIVSFLWVL 170
           E LP +Y+   L    L  +SF W L
Sbjct: 645 ESLPEIYSHLELLGVDLDAISFHWFL 670


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 84  NPIEHLPGVYASFPL 128
           NP EH+ G Y + PL
Sbjct: 198 NPAEHMTGAYVNTPL 212


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +1

Query: 238 RRTVPGGARVRIVILINVFNVL 303
           R+  PGG  +  ++L+N++ ++
Sbjct: 377 RKLTPGGIPLNAILLVNLYTII 398


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 91  LSTFPAFTPAFHCFPIVFLL 150
           +S F  F+   +CFPI++L+
Sbjct: 146 ISFFNLFSIPAYCFPIIYLI 165


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 90  IEHLPGVYASFPLFSYCLSIVSFLWVL--DTLIKY 188
           ++HL  +YAS P F  C++ +     L  D ++KY
Sbjct: 150 VKHLQELYASNPKFYPCVNQIELHPFLSQDDIVKY 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,329,116
Number of Sequences: 5004
Number of extensions: 25234
Number of successful extensions: 54
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)