Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P08
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260...    28   1.3  
10_08_1026 + 22400551-22401161,22401437-22401632,22401837-224018...    26   5.2  
05_05_0345 - 24237991-24238868,24238956-24239307                       26   5.2  
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426...    26   6.9  
01_01_0407 - 3067071-3070085                                           26   6.9  
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124...    25   9.2  

>11_05_0081 -
           18924353-18924462,18925068-18925187,18925569-18926086,
           18927392-18927471,18927680-18927782,18928084-18928295,
           18928392-18929210,18929331-18929444,18929935-18929983,
           18930115-18930271,18930354-18930807,18930938-18931147
          Length = 981

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 82  LTPLSTFPAFTPAFHCFPIVFLLFHFYGY 168
           L  L+ F AF  + HCF IV+ L   +GY
Sbjct: 561 LNRLTGFNAFWYSHHCFVIVYALLIVHGY 589


>10_08_1026 +
           22400551-22401161,22401437-22401632,22401837-22401889,
           22402369-22402819
          Length = 436

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 234 SVHRAVCARPYIDHYDILLMCRVPIKMKQ 148
           S H+  CA  YID  D+L++  + ++ K+
Sbjct: 308 SDHQLSCANMYIDQTDMLMVIPMKVQFKE 336


>05_05_0345 - 24237991-24238868,24238956-24239307
          Length = 409

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 172 SSTHKNETIERQ*ENNGKLA*TPGRCSMGLITNLLFRHI 56
           SST +++  +R+ E   + A +PG CS   +  +  RH+
Sbjct: 156 SSTKQSKIQQRERELRRQQAPSPGTCSCASLLQIALRHL 194


>06_01_0591 +
           4261483-4261631,4261837-4262007,4262127-4262226,
           4263151-4263315,4263416-4263544,4263758-4263858,
           4264527-4264596,4265080-4265331,4265828-4265897,
           4266281-4266341,4266916-4267003,4267746-4267830,
           4268168-4268234,4268442-4268559,4268843-4268923,
           4269022-4269267,4269670-4269771,4269847-4269914,
           4270040-4270171,4270283-4270430,4270504-4270790,
           4270920-4271067,4271156-4271331,4271407-4271518,
           4271614-4271667,4273134-4273244,4273317-4273478,
           4273627-4273814,4273948-4274137,4274297-4274464,
           4274832-4274912
          Length = 1359

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 63  RNKRFVINPIEHLPGVYASFPLFSYCLSIVSFLWVLDTLIKYHNDQYK 206
           R+ +F++  +  L  V+   P F +   I+ F W+L  L++  + QYK
Sbjct: 188 RSSQFLVWMVVGLVSVHG--PWFVFYNPIMCFCWILKILLEIPHLQYK 233


>01_01_0407 - 3067071-3070085
          Length = 1004

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 57  ICRNKRFVINPIEHLPGVYASFPLFS 134
           I ++K+ V   + H PG+Y + P FS
Sbjct: 296 IFKHKKLVTIDLYHNPGIYGTLPNFS 321


>02_03_0176 +
           16010806-16011095,16011983-16012061,16012389-16012464,
           16012541-16012630,16012878-16013031,16013172-16013181,
           16013240-16013407,16014087-16014485,16014580-16014990
          Length = 558

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 60  CRNKRFVINPIEHLPGVYASFPLFSYCLSIVSFLW 164
           CR     I P++HL   Y  +P      S++SFL+
Sbjct: 255 CRGNHEAIKPLDHLSACYLLYP-----TSLLSFLY 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,388,442
Number of Sequences: 37544
Number of extensions: 153927
Number of successful extensions: 351
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)