Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P08
         (310 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.77 
SB_35562| Best HMM Match : MAM (HMM E-Value=6.4e-20)                   29   1.0  
SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)                  28   1.3  
SB_11886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_45994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_32114| Best HMM Match : PAN (HMM E-Value=0.11)                      26   7.2  
SB_375| Best HMM Match : GalP_UDP_transf (HMM E-Value=3.2)             26   7.2  

>SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 106 PGRCSMGLITNLLFRHIYFFSMIIMLTLYTIKILV 2
           PG CS  ++ +  F  I+F S+II+++  ++  L+
Sbjct: 375 PGTCSSNILCSFTFPAIFFSSVIIIVSTISMSTLI 409


>SB_35562| Best HMM Match : MAM (HMM E-Value=6.4e-20)
          Length = 256

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 81  INPIEHLPGVYASFPLFSYCLS 146
           IN I+ LPGVY S+P ++  LS
Sbjct: 188 INDIKVLPGVYGSYPKYTVLLS 209


>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
          Length = 822

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 276 HNTHTCASRHRAP--RSVHRAVCARPYIDHYDILLMCRVPIKM 154
           HN H CAS  + P  RS H ++      D++ IL+     + M
Sbjct: 778 HNNHVCASLRQTPIARSTHASLSVSVEPDYFYILVQTHSVVHM 820


>SB_11886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 99  LPGVYASFPLFSYCLSIVSFLWVLDTLIKY 188
           L G YA++ L S C  I+S +W+ D  + +
Sbjct: 9   LEGDYATYELDSECRQIISEIWLRDDCVTF 38


>SB_45994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 137 IGKQWKAGVNAGKVLNGVN 81
           I KQW     +GKVLNG+N
Sbjct: 19  ISKQWLYARQSGKVLNGLN 37


>SB_32114| Best HMM Match : PAN (HMM E-Value=0.11)
          Length = 390

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 99  LPGVYASFPLFSYCLSIVSFLWVLD 173
           L G YA++ L S C  I+S +W+ D
Sbjct: 14  LEGDYATYELDSECRYIISEMWLRD 38


>SB_375| Best HMM Match : GalP_UDP_transf (HMM E-Value=3.2)
          Length = 364

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 299 TLNTFIRITIRTRAPPGTVRRAVCTAQ 219
           T+  + R  +RTR PP  V+R  C  Q
Sbjct: 144 TIARWERTRVRTRGPPRQVQRLPCLVQ 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,190,987
Number of Sequences: 59808
Number of extensions: 191933
Number of successful extensions: 365
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)