Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P08
         (310 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25090.1 68417.m03604 respiratory burst oxidase, putative / N...    27   3.4  
At3g14610.1 68416.m01850 cytochrome P450, putative similar to GB...    26   4.5  
At2g32530.1 68415.m03974 cellulose synthase family protein simil...    26   4.5  
At5g51060.1 68418.m06329 respiratory burst oxidase protein C (Rb...    26   5.9  
At3g56150.1 68416.m06241 eukaryotic translation initiation facto...    26   5.9  

>At4g25090.1 68417.m03604 respiratory burst oxidase, putative /
           NADPH oxidase, putative similar to respiratory burst
           oxidase protein A from Arabidopsis thaliana, gb:AF055353
           [gi:3242781], protein D [gi:3242789]; contains Pfam
           profile PF01794 Ferric reductase like transmembrane
           component
          Length = 849

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 82  LTPLSTFPAFTPAFHCFPIVFLLFHFYGY 168
           L  L++F AF    H F IV++L   +GY
Sbjct: 478 LKKLASFNAFWYTHHLFVIVYILLVLHGY 506


>At3g14610.1 68416.m01850 cytochrome P450, putative similar to
           GB:Q05047 from [Catharanthus roseus]
          Length = 512

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 72  RFVINPIEHLPGVYASFPLFSYCLSIVSFLW 164
           R +INP  HL  +    P F +C S V   W
Sbjct: 151 RRIINPAFHLEKIKNMIPAFYHCCSEVVCQW 181


>At2g32530.1 68415.m03974 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 755

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 138 CLSIVSFLWVLDTLIKYHNDQYK 206
           C S  SF+W+L T IK+    YK
Sbjct: 57  CESFFSFIWLLITSIKWSPASYK 79


>At5g51060.1 68418.m06329 respiratory burst oxidase protein C
           (RbohC) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein C from Arabidopsis thaliana
           [gi:3242785]
          Length = 905

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 82  LTPLSTFPAFTPAFHCFPIVFLLFHFYGY 168
           L  L++F AF    H F IV++L   +GY
Sbjct: 525 LKKLASFNAFWYTHHLFVIVYILLVAHGY 553


>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
           subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
           identical to SP|O49160 Eukaryotic translation initiation
           factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
           {Arabidopsis thaliana}
          Length = 900

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 102 PGVYASFPLFSYCLSIVSFLWVLDTLIKYHN 194
           PG+    P+  +   +++ L +LD L+KY N
Sbjct: 296 PGLSGHMPINVWKKCVLNMLTILDILVKYSN 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,784,862
Number of Sequences: 28952
Number of extensions: 125437
Number of successful extensions: 296
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)