Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P07
(260 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces pombe... 27 0.54
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 1.3
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 25 1.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 2.2
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 24 2.9
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 24 2.9
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 24 2.9
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 23 5.1
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 23 6.7
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 23 6.7
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 23 8.8
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 23 8.8
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 23 8.8
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 23 8.8
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 23 8.8
>SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 94
Score = 26.6 bits (56), Expect = 0.54
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +2
Query: 5 EAVWHIIGYIKCTMLF 52
+A +H+IGYI C++LF
Sbjct: 24 KAFFHLIGYITCSVLF 39
>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 100
Score = 25.4 bits (53), Expect = 1.3
Identities = 8/26 (30%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 112 IHFYFNVIFIRMNTRYI-YNFVIALY 186
IH++F + F++MN Y Y ++++ +
Sbjct: 11 IHYHFIISFMKMNDSYTPYTYIVSFH 36
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 1.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 186 IKCYYKIIDITCIHSYEYYIEIKMNTF*NIKKQVSKETLIP 64
+ C YK+ + I + Y I I+ F N +K+ E + P
Sbjct: 336 VSCLYKVSEDGLIKDFLYAIGIEAKKFNNERKKRELEVIPP 376
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 2.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 190 INKVLLQNYRYNVYSFL*ILH*NKNE 113
+NKVL++N ++YS+L IL NE
Sbjct: 2471 LNKVLVENEVGDIYSYLKILGKGVNE 2496
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 24.2 bits (50), Expect = 2.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 67 SSVXKEEHSTFNISNDMP 14
SSV + STFN+SN +P
Sbjct: 81 SSVYQSYSSTFNVSNHVP 98
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 24.2 bits (50), Expect = 2.9
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = +1
Query: 40 YYALPSXLRNQSFLTYLFFNILKSIHFYFNVIFIRMNTRYI 162
+ A P+ L ++FF I ++ Y N+ F+ +++ +
Sbjct: 397 FVAPPTGYEIIPVLWFIFFGIFIPVYLYMNLAFVEPSSKLL 437
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 24.2 bits (50), Expect = 2.9
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = -3
Query: 255 KNSPVTFTNSFSTIKLQ*IHFTSIKCYYKIIDITCIHSYEYYIEIKMNTF 106
K ++ NS +T+ L+ +H+ +K++DI + SY + I + +TF
Sbjct: 425 KGIKISSINSGATMLLK-LHYN-----WKLLDIKALISYHFAIPVHTSTF 468
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 46 ALPSXLRNQSFLTYLFFNILKSIHFYFNV---IFIRMNTRYIY 165
+LP+ L+ ++ L +LF LK +H + + +F+R +++
Sbjct: 83 SLPAYLQPKNRLQFLFLGPLKVLHQFLALNWALFVRKPASFLF 125
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 23.0 bits (47), Expect = 6.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -1
Query: 224 LAQLNYSKYILHQ 186
LA LNY +YI+H+
Sbjct: 1134 LASLNYYEYIIHE 1146
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -3
Query: 183 KCYYKIIDITCIHSYEYYIEIKMNTF*NIKKQVSKET 73
+ Y ++ ITC+ ++YY E + + I + ET
Sbjct: 391 RLYLLLVCITCLTKHQYYDEEFADVWREIDTLANSET 427
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 22.6 bits (46), Expect = 8.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 111 YSFLFQCNIHKNE 149
Y FLF CN+ +N+
Sbjct: 27 YEFLFTCNLTEND 39
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 22.6 bits (46), Expect = 8.8
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = +1
Query: 85 YLFFNILKSIHFYFNVIFIRMNTRY 159
++ FN + ++YF+ + M RY
Sbjct: 967 FVLFNFSQPYYYYFSFLLAEMYLRY 991
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 22.6 bits (46), Expect = 8.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 241 NVYEQF*HN*ITVNTFYINKVLLQNYRYN 155
N +E H +++N+F+IN +L ++ R N
Sbjct: 856 NQFEDNSHLRMSINSFHINDMLSKSSRDN 884
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 22.6 bits (46), Expect = 8.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 108 KYSFLFQCNIHKNEYTLYL*FCNST 182
K SFLF + NEY ++ FC +
Sbjct: 22 KPSFLFSLISNVNEYERFVPFCQKS 46
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 22.6 bits (46), Expect = 8.8
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +2
Query: 23 IGYIK--CTMLFLXY*GIKVSLLTCFL 97
I YIK C +F G+ +SLL C L
Sbjct: 14 IEYIKLPCLFIFAAIVGMNLSLLYCLL 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 995,528
Number of Sequences: 5004
Number of extensions: 17689
Number of successful extensions: 38
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -