Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P07
         (260 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0118 - 8586731-8587220,8587331-8587846,8588842-8588906,858...    26   3.6  
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320...    26   3.6  
07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451     26   4.8  
04_03_0513 - 16681227-16683936,16685572-16685966                       26   4.8  
01_01_0407 - 3067071-3070085                                           26   4.8  
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52...    25   8.4  

>05_03_0118 -
           8586731-8587220,8587331-8587846,8588842-8588906,
           8589483-8589989
          Length = 525

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 61  LRNQSFLTYLFFNILKSIHFYFNVIFIRMNTRYIYNFVI 177
           + +Q++L  +  N  + IH   N +F  +N  +  NF++
Sbjct: 69  MNDQTYLGLITCNRARKIHQEVNSLFTHLNPNFSENFIL 107


>01_01_0424 +
           3200223-3200634,3200677-3200836,3200987-3201342,
           3201958-3203252
          Length = 740

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 21  SLDILNVLCSSFXTEESKFPYLPVF*YFKKYSFL 122
           SLD L  L  S+   E K P  P F  F   SFL
Sbjct: 638 SLDFLGTLNLSYNMLEGKIPESPHFSLFSNSSFL 671


>07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451
          Length = 511

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 198 HFTSIKCYYKIIDITCIH 145
           HFT+ KCYY  + I  +H
Sbjct: 482 HFTTKKCYYDWVHIKDVH 499


>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 21   SLDILNVLCSSFXTEESKFPYLPVF*YFKKYSFL 122
            SLD L+ L  S+   E + P  P F  F   SFL
Sbjct: 932  SLDFLSTLNMSYNKLEGRIPESPHFLTFSNLSFL 965


>01_01_0407 - 3067071-3070085
          Length = 1004

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 21   SLDILNVLCSSFXTEESKFPYLPVF*YFKKYSFL 122
            SLD L VL  S+   E + P  P F  F   SFL
Sbjct: 902  SLDFLTVLNLSYNKLEGEIPESPHFLTFSNSSFL 935


>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
            525209-525401,525978-526330,526693-526791,526864-526935,
            527062-527213,527338-527386,527755-527885,528067-528307,
            528392-528565,528656-528797,529236-529282,529370-529450,
            530170-530271,530345-530440,531437-531444,531575-531616,
            531830-531894,534761-534853,534888-534959,535303-535509,
            536318-537226,537503-538158
          Length = 1429

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 64   RNQSFLTYLFFNILKSIHFYFNVIFIRMNTRYIY 165
            +N+ F   LFF I+KS H++  VI ++ + R+++
Sbjct: 1321 QNRLFERMLFFPIVKSRHWFVFVIDLK-SERFVF 1353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,190,138
Number of Sequences: 37544
Number of extensions: 76220
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)