Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P07
         (260 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20633| Best HMM Match : Toxin_13 (HMM E-Value=0.13)                 26   4.2  
SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11)          25   7.3  
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)               25   9.7  
SB_3245| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.7  

>SB_20633| Best HMM Match : Toxin_13 (HMM E-Value=0.13)
          Length = 225

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 97  NILKSIHFYFNVIFIRMNTRYIY 165
           N  KSIHF+ +  +  M+ RY+Y
Sbjct: 107 NANKSIHFFLDFCYQDMHPRYLY 129


>SB_28421| Best HMM Match : Oxysterol_BP (HMM E-Value=4.5e-11)
          Length = 378

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 4   RGCMAYHWIY*MYYALPSXLRNQSF 78
           R C + HW++   Y L +  R Q F
Sbjct: 99  RACESSHWVFWQEYKLDTKFRGQFF 123


>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
          Length = 450

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 38  CTMLFLXY*GIKVSLLTCFLIF*KVFIFI 124
           C + FL Y GI   L  CF I   +F+ +
Sbjct: 74  CPLTFLLYYGISAILDECFAIRKDIFVVV 102


>SB_3245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 38  CTMLFLXY*GIKVSLLTCFLIF*KVFIFI 124
           C + FL Y GI   L  CF I   +F+ +
Sbjct: 18  CPLTFLLYYGISAILDECFAIRKDIFVVV 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,590,035
Number of Sequences: 59808
Number of extensions: 106219
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 16,821,457
effective HSP length: 63
effective length of database: 13,053,553
effective search space used: 300231719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)