Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P07
         (260 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine re...    28   0.79 
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    27   1.4  
AF047652-6|AAC04390.3|  397|Caenorhabditis elegans Hypothetical ...    27   1.4  
Z81056-7|CAB02909.1|  309|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U41996-5|AAA83474.1|  296|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva ...    25   5.6  
U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein ...    25   7.4  
Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    25   9.8  
AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical ...    25   9.8  
AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 31 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +1

Query: 79  LTYLFFNILKSIHFYFNVIFIRMNTRYIYNFVIALY*CKMY 201
           +T   +  + +I +   V+F+  N ++  N+ + LY C+ +
Sbjct: 7   ITQFIYGTISTIIYSLTVVFLTKNWKHFDNYFLKLYICQFF 47


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +1

Query: 55  SXLRNQSFLTYLFFNILKSIHFYFNVIFIRMNTRYIYNFVIAL 183
           + LR   +L YLFF    + +++ + +  R+N   ++ F++ +
Sbjct: 5   NSLRFDIYLWYLFFIPFSNSYYFSSFLSNRINRNLLFQFIVVM 47


>AF047652-6|AAC04390.3|  397|Caenorhabditis elegans Hypothetical
           protein C34H4.1 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 81  YLPVF*YFKKYSFLFQCNIHKNEYTLYL*FCNS 179
           Y  +F Y K Y+ L+  + + NE   YL +C S
Sbjct: 323 YTDIFQYPKNYTTLYMDHTNTNEGIFYLQYCRS 355


>Z81056-7|CAB02909.1|  309|Caenorhabditis elegans Hypothetical
           protein F09F3.13 protein.
          Length = 309

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/53 (18%), Positives = 25/53 (47%)
 Frame = +1

Query: 10  CMAYHWIY*MYYALPSXLRNQSFLTYLFFNILKSIHFYFNVIFIRMNTRYIYN 168
           CMA +  + +Y+        +S++TY    +   +   + ++ +R    Y+Y+
Sbjct: 102 CMAANRFFVIYFPFRQHKSKRSYVTYFAIAVCLGLAITYTLLGLRKLCAYVYD 154


>U41996-5|AAA83474.1|  296|Caenorhabditis elegans Hypothetical
           protein F38E1.6 protein.
          Length = 296

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -3

Query: 186 IKCYYKIID--ITCIHSYEYYIEIKMN 112
           +K   +IID  + C HSY YYI +  N
Sbjct: 87  LKSVEEIIDHELQCAHSYSYYILVLAN 113


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 50  FLXY*GIKVSLLTCFLIF 103
           FL   GI+V+LL CFL+F
Sbjct: 213 FLFLLGIQVTLLFCFLLF 230


>U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva
           protein 7 protein.
          Length = 329

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 211 ITVNTFYINKVLLQNYRYNVYSFL 140
           I+V   ++NK+LL NY++  + F+
Sbjct: 22  ISVLIVFVNKILLTNYKFPSFLFV 45


>U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical
           protein R12C12.3 protein.
          Length = 340

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 118 FYFNVIFIRMNTRYIYNFVIALY*CKMYLL 207
           + F++ F   +TRY+Y   +    C +YL+
Sbjct: 79  YSFHMSFFAYSTRYVYPLCMMTKSCSLYLM 108


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
           protein R09H10.5 protein.
          Length = 1603

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 198 HFTSIKCYYKIIDITCIHSYEYYIEIKMN 112
           H T +  YY ++D +   S  +YI    N
Sbjct: 865 HHTEVVAYYNVMDCSLFASRSFYISSATN 893


>Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical
           protein C12D8.12 protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 85  YLFFNILKSIHFYFNVIFIRMNTRYIY 165
           Y FF  L S+HF +    ++  +++IY
Sbjct: 95  YFFFASLISVHFVYRYKALKYGSKWIY 121


>Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical
           protein K04C1.1 protein.
          Length = 307

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 97  NILKSIHFYFNVIFIRMNTRYIYNFVIA 180
           N+  ++H+YF        T+YIYNF+I+
Sbjct: 94  NLFHALHYYFAY------TQYIYNFLIS 115


>Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical
           protein F35G12.6 protein.
          Length = 364

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 75  FPYLPVF*YFKKYSFLFQCNIHKNEY 152
           FP  PV  Y  K   L++C  H +EY
Sbjct: 269 FPGTPVTNYILKTLVLYECEKHCSEY 294


>U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein
           protein.
          Length = 364

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 75  FPYLPVF*YFKKYSFLFQCNIHKNEY 152
           FP  PV  Y  K   L++C  H +EY
Sbjct: 269 FPGTPVTNYILKTLVLYECEKHCSEY 294


>Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical
           protein F53F8.1 protein.
          Length = 354

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 73  FDSSVXKEEHSTFNISNDMP 14
           F+ ++ +  HS+FN S+D P
Sbjct: 134 FEENIPQGPHSSFNFSHDFP 153


>Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical
           protein C49F8.2 protein.
          Length = 771

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 189 SIKCYYKIIDITCIHSYEYYIE-IKM 115
           S+ C Y I+D+  +  YEY I+ +KM
Sbjct: 555 SVLCLYFILDVPYVCFYEYSIDTLKM 580


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical protein
            F07A11.4 protein.
          Length = 1095

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 118  NEYFLKY*KTGK*GNFDSSVXKEEHSTFNIS 26
            N YF  Y   G+  +FDSS  K E   F+ S
Sbjct: 1017 NSYFGHYISMGRLADFDSSKTKIEWRNFDDS 1047


>AL021491-4|CAA16374.2|  324|Caenorhabditis elegans Hypothetical
           protein Y44A6B.2 protein.
          Length = 324

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 79  LTYLFFNILKSIHFYFNVIFIRMNTRYIYNFVIA 180
           LT L FN L     Y  V   +  T YIYN +IA
Sbjct: 13  LTSLLFNALVFHVIYKQVDKSKFPTIYIYNTIIA 46


>AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical
           protein T23B12.4 protein.
          Length = 799

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 73  SFLTYLFFNILKSIHFYFNVIFIRMNTRYIYNF 171
           S  T++F N+L  I+ YF + F RM+    Y F
Sbjct: 552 SVATFVFHNLLAIINHYFELGF-RMDLYVPYEF 583


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,309,407
Number of Sequences: 27780
Number of extensions: 94583
Number of successful extensions: 231
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)