Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P07
         (260 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23160.1 68415.m02767 F-box family protein contains Pfam PF00...    31   0.11 

>At2g23160.1 68415.m02767 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 395

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 9   LYGISLDILNVLCSSFXTEESKFPYLPVF*YFKKYSFLFQCNIHKNEYTLYL 164
           LYG S D  +V+C+ +  E +  PYL    Y K YSFL    I K    L++
Sbjct: 122 LYGDSSDDRSVICNPYTGEYAILPYLQR--YRKTYSFLVFEPIEKQFKILFM 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,658,907
Number of Sequences: 28952
Number of extensions: 74358
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 12,070,560
effective HSP length: 65
effective length of database: 10,188,680
effective search space used: 213962280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)