Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P05
         (141 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AF098992-2|AAC67459.1|  122|Caenorhabditis elegans Hypothetical ...    25   5.6  

>Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical
           protein F40F9.6b protein.
          Length = 910

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 124 SASTSSIICSVIRTRHRLKIYWY 56
           S  T  II   +RTR+ L  YWY
Sbjct: 650 SEQTQQIIREALRTRYALLPYWY 672


>Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical
           protein F40F9.6a protein.
          Length = 924

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 124 SASTSSIICSVIRTRHRLKIYWY 56
           S  T  II   +RTR+ L  YWY
Sbjct: 664 SEQTQQIIREALRTRYALLPYWY 686


>AF098992-2|AAC67459.1|  122|Caenorhabditis elegans Hypothetical
           protein F53C3.8 protein.
          Length = 122

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 38  PLIGKYVPVNF*TMAGSNHTT 100
           P++G+ VP+ F  M+GSN +T
Sbjct: 58  PVMGEAVPMTFFPMSGSNTST 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,644
Number of Sequences: 27780
Number of extensions: 33432
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 12,740,198
effective HSP length: 27
effective length of database: 11,990,138
effective search space used: 227812622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)