Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P04
         (454 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   0.77 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.3  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   4.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   7.1  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    20   9.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 0.77
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 385 SQYIKRRLETSAHCQLYSIWA 447
           +++ + R + S H Q+Y IWA
Sbjct: 18  NEFYRGRKKLSKHQQIYGIWA 38


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +3

Query: 114 GVHKKRRQLHSCEL 155
           GVH +++ +HSC +
Sbjct: 306 GVHLRKKNIHSCHI 319


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 359 NIDLEGNVCLNILRE 403
           ++DL GNVC  ++R+
Sbjct: 158 DVDLIGNVCSYVVRD 172


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 380  VCLNILREDWKPV 418
            +C N++++ WK V
Sbjct: 2107 ICTNVIKKGWKVV 2119


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +2

Query: 71  LKQQKKDEEGSARAGGSQKKASAAQLRITKDLNELNLPKTCST 199
           +K+++KD+    R   S    +++Q      L++ N  K C +
Sbjct: 373 VKKRRKDKREITRKSTSSSTHTSSQQTSDSFLSKRNSEKKCGS 415


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 305 NYPHEPPKVKCETAVYHP 358
           +YP  PP      A YHP
Sbjct: 161 HYPPPPPVYTHHYARYHP 178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,630
Number of Sequences: 336
Number of extensions: 1895
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)