Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P04
(454 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18) 74 6e-14
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15) 71 6e-13
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 64 7e-11
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 61 5e-10
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 54 6e-08
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 54 6e-08
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 6e-06
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-05
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 44 8e-05
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 42 3e-04
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.78
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 30 0.78
SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_57505| Best HMM Match : ShTK (HMM E-Value=4.1e-06) 28 4.2
SB_41271| Best HMM Match : EGF (HMM E-Value=1.2e-20) 27 5.5
SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86) 27 5.5
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 27 9.6
>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
Length = 215
Score = 73.7 bits (173), Expect = 6e-14
Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +2
Query: 215 DDLLNFKLIICPDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDL-EGNVCLN 391
D++ F+L I P +G YRGG+F FS K +YP+ PP +C +YHPN+DL +G+VCL+
Sbjct: 34 DNMEEFELQITPTDGAYRGGQFKFSVKT-EDYPNTPPVPRCVNNIYHPNMDLDDGSVCLS 92
Query: 392 ILREDWKPVLTVNSIVYGLQY 454
+L +DW + +V GL +
Sbjct: 93 LL-DDWNESNDLEDLVQGLLF 112
>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
Length = 243
Score = 70.5 bits (165), Expect = 6e-13
Identities = 31/80 (38%), Positives = 51/80 (63%)
Frame = +2
Query: 215 DDLLNFKLIICPDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNI 394
D++ F+L I P +G YRGG+F FS + +YP+ P + C+T +YHPN+D VC+++
Sbjct: 34 DNMEEFELQITPTDGAYRGGQFKFSVRT-TDYPNVAPSINCKTKIYHPNMDGYDGVCMSL 92
Query: 395 LREDWKPVLTVNSIVYGLQY 454
L +DW+ + +V GL +
Sbjct: 93 L-DDWQASNDLEDLVQGLLF 111
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 63.7 bits (148), Expect = 7e-11
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 209 DPDDLLNFKLIICPDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCL 388
D ++L ++ +I P+ Y G F YP +PPK+ +T +YHPNID +G VCL
Sbjct: 19 DESNILYWQGLIVPEMPPYNKGAFRIEICFPAEYPFKPPKITFKTKIYHPNIDEKGQVCL 78
Query: 389 NILR-EDWKPVLTVNSIVYGL 448
I+ E+WKP ++ L
Sbjct: 79 PIISPENWKPATKTEQVIQAL 99
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 60.9 bits (141), Expect = 5e-10
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = +2
Query: 263 YRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNILRED----WKPVLTVN 430
Y G F ++ YP EPPKV+ T +YHPNID G +CL+ L+ WKP L ++
Sbjct: 10 YHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWKPALNIS 69
Query: 431 SIV 439
S++
Sbjct: 70 SVL 72
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 54.0 bits (124), Expect = 6e-08
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Frame = +2
Query: 293 KVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNILRED----WKPVLTVNSIV 439
K+ + P EPPKV+ T +YHPNID G +CL+ L+ WKP L ++S++
Sbjct: 34 KLEASTPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWKPALNISSVL 86
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 54.0 bits (124), Expect = 6e-08
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Frame = +2
Query: 77 QQKKDEEGSARAGGSQKKASAAQLRITKDLNELNL--PKTCSTEFSDPDDLLN-FKLIIC 247
+Q++ + S+R + K S A RI ++L E+ L P CS DDL + I+
Sbjct: 77 KQRESRKSSSRF--TAKNQSTAAKRIQRELTEITLDPPPNCSAG-PKGDDLYEWYSTILG 133
Query: 248 PDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNILREDWKPVLTV 427
P Y GG F +YP +PPK G VCL+IL++ W P LT+
Sbjct: 134 PPGSVYEGGVFFLDIHFPSDYPFKPPK---------------GMVCLDILKDSWSPALTI 178
Query: 428 NSIVYGL 448
+ ++ +
Sbjct: 179 SKVLLSI 185
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 47.2 bits (107), Expect = 6e-06
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 209 DPDDLLNFKLIICPDEG-FYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVC 385
D +DL +++++ G +Y G F S YP PP + + ++HPN+ G VC
Sbjct: 358 DDEDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFISDIWHPNVHKNGEVC 417
Query: 386 LNILRE 403
++IL E
Sbjct: 418 ISILHE 423
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 44.4 bits (100), Expect = 4e-05
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +2
Query: 209 DPDDLLNFKLIIC-PDEGFYRGGRFIFSFKVGPNYPHEPPKVKCET-----AVYHPNIDL 370
D DD+ +I P + Y GG F F + P+YP PP+VK T ++PN+
Sbjct: 6 DKDDIPKIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNLYR 65
Query: 371 EGNVCLNIL 397
G VCL+I+
Sbjct: 66 NGKVCLSII 74
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 43.6 bits (98), Expect = 8e-05
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +2
Query: 212 PDDLLNFK---LIICPDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNV 382
PD+ F+ I P Y GG F +YP+ PP + T ++HPNI G+V
Sbjct: 1149 PDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDYPYSPPTFRFLTKMWHPNIYESGDV 1208
Query: 383 CLNIL 397
C++IL
Sbjct: 1209 CISIL 1213
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 42.7 bits (96), Expect = 1e-04
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +2
Query: 341 TAVYHPNIDLEGNVCLNILREDWKPVLTVNSIV 439
T ++HPN+ G +C+N L++DWKP L + ++
Sbjct: 149 TKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVL 181
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 41.5 bits (93), Expect = 3e-04
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +2
Query: 77 QQKKDEEGSARAGGSQKKASAAQLRITKDLNELNL--PKTCSTEFSDPDDLLN-FKLIIC 247
+Q++ + S+R + K S A RI ++L E+ L P CS DDL + I+
Sbjct: 117 KQRESRKSSSRF--TAKNQSTAAKRIQRELTEITLDPPPNCSAG-PKGDDLYEWYSTILG 173
Query: 248 PDEGFYRGGRFIFSFKVGPNYPHEPPK 328
P Y GG F +YP +PPK
Sbjct: 174 PPGSVYEGGVFFLDIHFPSDYPFKPPK 200
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 30.3 bits (65), Expect = 0.78
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +2
Query: 248 PDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNILR---EDWKPV 418
P + + GGR+ + P YP +PP + T + ++ +CL++ E W+P
Sbjct: 48 PPDTEFAGGRYHGRIILPPEYPMKPPSIMLLTP--NGRFEIGKKICLSMSAHHPETWQPS 105
Query: 419 LTVNSIVYGL 448
++ +++ +
Sbjct: 106 WSIRTVLMAI 115
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 30.3 bits (65), Expect = 0.78
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +2
Query: 182 PKTCST--EFSDP--DDLLN-FKLIICPDEGFYRGGRFIFSFKVGPNYPHEPPKV 331
PKT ST + + P D L + I+ P Y GG F +YP +PPKV
Sbjct: 34 PKTLSTAAKSAGPKGDKLYEWYSTILGPPGSVYEGGVFFLDIHFPTDYPFKPPKV 88
>SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 281 IFSFKV--GPNYPHEPPKVKCETAVYHPNIDLEG 376
I++ K+ GPNYP +PP VK + + ++ +G
Sbjct: 7 IYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSKG 40
>SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 281 IFSFKV--GPNYPHEPPKVKCETAVYHPNIDLEG 376
I++ K+ GPNYP +PP VK + + ++ +G
Sbjct: 7 IYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSKG 40
>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1147
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = -2
Query: 240 INLKLSKSSGSENSVLQVLGRFSSFKSFVIRSCAADAFFCEPPALAEPSSSFFC 79
+++ ++++ + ++ L SS S I C AD CE + SF C
Sbjct: 510 VSITTARATTTSSTTTNTLANISSNNSSNINECLADPNLCEHGQCINKAGSFMC 563
>SB_57505| Best HMM Match : ShTK (HMM E-Value=4.1e-06)
Length = 101
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 186 LGRFSSFKSFVIRSCAADAFFCEPPALAEPSS 91
+G S K F++R+C A FC P + P +
Sbjct: 23 VGYCQSNKKFMMRNCPASCGFCGSPPILSPKN 54
>SB_41271| Best HMM Match : EGF (HMM E-Value=1.2e-20)
Length = 169
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = -2
Query: 246 HIINLKLSKSSGSENSVLQVLGRFSSFKSFVIRSCAADAFFCEPPALAEPSSSFFCCFNE 67
+ +NL++ + + + V++ L S+ + F SC D E P S+S +
Sbjct: 77 YTLNLQMQRRNNQDGRVVKALDLSSNVRGFEPHSCPGDPLVLERPPPRWSSNSPYSESYY 136
Query: 66 KSFIIVL 46
S +VL
Sbjct: 137 NSLAVVL 143
>SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)
Length = 1578
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 53 MIKLFSLKQQKKDEEGSARAGGSQKKASAAQLRITKDLNE-LNLP 184
M ++ L K +GS G+QK A A + R KDL E L+LP
Sbjct: 1089 MQRMAILDPSSKKADGSIDQLGAQKTAYALKKRNAKDLQEALDLP 1133
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +2
Query: 263 YRGGRFIFSFKVGPNYPHEPPK---VKCETAVYHPNIDLEGNVCL 388
Y G F F + NYP PP + +PN+ +G VC+
Sbjct: 648 YDHGLFAFDILLPANYPDAPPSFHYLSMCNGRLNPNLYEDGKVCI 692
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,916,023
Number of Sequences: 59808
Number of extensions: 206248
Number of successful extensions: 531
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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