Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P04
(454 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 81 4e-16
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 80 6e-16
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 80 6e-16
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 69 2e-12
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 66 9e-12
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 64 5e-11
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 62 1e-10
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 62 1e-10
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 62 2e-10
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 60 6e-10
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 56 2e-08
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 56 2e-08
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 54 4e-08
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 50 6e-07
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 49 2e-06
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 47 7e-06
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 46 1e-05
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 40 6e-04
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 38 0.003
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 36 0.014
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 36 0.018
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 30 0.91
AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core alpha-6-... 28 2.8
AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl trans... 28 2.8
Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical pr... 27 4.8
AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin con... 27 4.8
U67955-2|AAB07583.2| 791|Caenorhabditis elegans Hypothetical pr... 27 8.4
AY204190-1|AAO39194.1| 382|Caenorhabditis elegans nuclear recep... 27 8.4
AF022978-5|AAG24181.2| 382|Caenorhabditis elegans Nuclear hormo... 27 8.4
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 81.0 bits (191), Expect = 4e-16
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 6/82 (7%)
Frame = +2
Query: 221 LLNFKLIICPDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNILR 400
L +L + P EG YRGG+F F V P Y + PP VKC T V+HPNI+ +G++CL+ILR
Sbjct: 58 LHELELTVTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILR 117
Query: 401 ED------WKPVLTVNSIVYGL 448
++ W+P + +V+GL
Sbjct: 118 QNSLDQYGWRPTRNLTDVVHGL 139
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 80.2 bits (189), Expect = 6e-16
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Frame = +2
Query: 149 RITKDLNELNL--PKTCSTEFSDPDDLLNFKLIIC-PDEGFYRGGRFIFSFKVGPNYPHE 319
RI K+L +L P CS DDL +++ I P E Y+GG F + +YP +
Sbjct: 5 RIQKELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 320 PPKVKCETAVYHPNIDLEGNVCLNILREDWKPVLTVNSIVYGL 448
PPKV T +YHPNI+ G++CL+ILR W P LT++ ++ +
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 106
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 80.2 bits (189), Expect = 6e-16
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Frame = +2
Query: 149 RITKDLNELNL--PKTCSTEFSDPDDLLNFKLIIC-PDEGFYRGGRFIFSFKVGPNYPHE 319
RI K+L +L P CS DDL +++ I P E Y+GG F + +YP +
Sbjct: 5 RIQKELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 320 PPKVKCETAVYHPNIDLEGNVCLNILREDWKPVLTVNSIVYGL 448
PPKV T +YHPNI+ G++CL+ILR W P LT++ ++ +
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSI 106
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 68.5 bits (160), Expect = 2e-12
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Frame = +2
Query: 137 AAQLRITKDLNELNL--PKTCSTEFSDPDDLLNFKLIICPDEGFYRGGRFIFSFKVGPNY 310
+A R+ K+L +L K + +LL + +++ PD+ Y G F +Y
Sbjct: 2 SATRRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLIPDKEPYNKGAFKVGITFPVDY 61
Query: 311 PHEPPKVKCETAVYHPNIDLEGNVCLNIL-REDWKPVLTVNSIVYGL 448
P +PPKV ET +YHPN+D EG CL I+ E+WKP ++ L
Sbjct: 62 PFKPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMAL 108
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 66.5 bits (155), Expect = 9e-12
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +2
Query: 236 LIICPDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNILREDWKP 415
+I PD+ + GG F + YP PKV+ T +YHPNID G +CL+IL++ W P
Sbjct: 39 MIAGPDDSPFAGGVFKLELFLPEEYPMAAPKVRFMTKIYHPNIDKLGRICLDILKDKWSP 98
Query: 416 VLTVNSIVYGLQ 451
L + +++ +Q
Sbjct: 99 ALQIRTVLLSIQ 110
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 64.1 bits (149), Expect = 5e-11
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Frame = +2
Query: 131 ASAAQLRITKDLNELN--LPKTCSTE-FSDPDDLLNFKLIICPDEG-FYRGGRFIFSFKV 298
+ AA R+ K+L +L P+ + S +DL +K+ + EG Y G F+ F
Sbjct: 2 SDAATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTF 61
Query: 299 GPNYPHEPPKVKC--ETAVYHPNIDLEGNVCLNILREDWKPVLTVNSI 436
GP YP P+V ET HP+I G++CL+IL +DW P L+V S+
Sbjct: 62 GPQYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSV 109
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 62.5 bits (145), Expect = 1e-10
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 215 DDLLNFKLIIC-PDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLN 391
D++L ++ II P E + G F S + YP++PP VK + ++HPN+ +G++CL+
Sbjct: 31 DNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLD 90
Query: 392 ILREDWKPVLTVNSIVYGLQ 451
IL+ W P V +I+ +Q
Sbjct: 91 ILQNRWSPTYDVAAILTSIQ 110
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 62.5 bits (145), Expect = 1e-10
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 215 DDLLNFKLIIC-PDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLN 391
D++L ++ II P E + G F S + YP++PP VK + ++HPN+ +G++CL+
Sbjct: 31 DNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLD 90
Query: 392 ILREDWKPVLTVNSIVYGLQ 451
IL+ W P V +I+ +Q
Sbjct: 91 ILQNRWSPTYDVAAILTSIQ 110
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 61.7 bits (143), Expect = 2e-10
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +2
Query: 248 PDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLE-GNVCLNILREDWKPVLT 424
P + Y GG F K+ YP PP VK T ++HPN+ + G +CL+IL++ W LT
Sbjct: 46 PPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAASLT 105
Query: 425 VNSIVYGLQ 451
+ +++ +Q
Sbjct: 106 LRTVLLSIQ 114
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 60.5 bits (140), Expect = 6e-10
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +2
Query: 209 DPDDLLNFK-LIICPDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVC 385
D +D+ ++ L+I P + Y GG F +YP +PPK+K + ++HPNID EGNVC
Sbjct: 29 DDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVC 88
Query: 386 LNILRE 403
++IL +
Sbjct: 89 ISILHD 94
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 55.6 bits (128), Expect = 2e-08
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +2
Query: 263 YRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNILRE--DWKPVLTVNSI 436
+ GG + ++P PPK K E ++HPN+ G VCL++L E DWKP +++ +
Sbjct: 53 WEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQL 112
Query: 437 VYGLQ 451
+ G+Q
Sbjct: 113 LIGIQ 117
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 55.6 bits (128), Expect = 2e-08
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +2
Query: 263 YRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNILRE--DWKPVLTVNSI 436
+ GG + ++P PPK K E ++HPN+ G VCL++L E DWKP +++ +
Sbjct: 53 WEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQL 112
Query: 437 VYGLQ 451
+ G+Q
Sbjct: 113 LIGIQ 117
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 54.4 bits (125), Expect = 4e-08
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Frame = +2
Query: 119 SQKKASAAQLR-ITKDLNEL-NLPKTCSTEFSDPDDLLNFKL-IICPDEGFYRGGRFIFS 289
S+ S+ LR +T +L L + P T + D+L + + I P + Y+GG F S
Sbjct: 3 SKASTSSGALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKAS 62
Query: 290 FKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNIL 397
+ NYP+ PP +K T V+HPN+ G++C++IL
Sbjct: 63 IRFPSNYPYSPPSMKFTTKVWHPNVYENGDLCISIL 98
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 50.4 bits (115), Expect = 6e-07
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 17/96 (17%)
Frame = +2
Query: 215 DDLLNFKLIICPDEGF-YRGGRFIFSFKVGPNYPHEPPKV---------------KCETA 346
++L++ K I EG Y GG F + +YP EPPKV K T
Sbjct: 48 NNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTR 107
Query: 347 VYHPNIDLE-GNVCLNILREDWKPVLTVNSIVYGLQ 451
++HPNI + G +CL+IL++ W LT+ +++ LQ
Sbjct: 108 IWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQ 143
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +2
Query: 218 DLLNFKLIICPDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNID-LEGNVCL-N 391
D+ FK+I D Y+ F + V YP +PP +K VYHPN+D + +C
Sbjct: 44 DIFQFKII--GDGVLYKNMIFTLTLDVNVEYPFKPPYLKFCHNVYHPNVDPVTCELCSPM 101
Query: 392 ILREDWKPVLTVNSIVYGL 448
+L+E+WKP T+ ++ L
Sbjct: 102 LLQENWKPETTMEDVLLNL 120
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 46.8 bits (106), Expect = 7e-06
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2
Query: 209 DPDDLLNFKLIIC-PDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVC 385
D D+ ++ +I P+E + G F +YP PPK++ ++HPNI +G VC
Sbjct: 30 DEDNFFEWECLITGPEETCFANGVFPARITFPQDYPLSPPKMRFTCGIFHPNIYADGRVC 89
Query: 386 LNIL 397
++IL
Sbjct: 90 ISIL 93
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +2
Query: 251 DEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNID-LEGNVCLNILRED-WKPVLT 424
+E Y GG F K+G +YP + P VK T ++HP++ +G +CL+ + W +T
Sbjct: 389 EETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNGVWPVSMT 448
Query: 425 VNSIVYGLQ 451
+ ++ +Q
Sbjct: 449 IYKVLIVIQ 457
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 40.3 bits (90), Expect = 6e-04
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 248 PDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNID-LEGNVCLNILREDWKPVLT 424
P + Y G + + YP + P + ++HPNID G VCL+++ + W +
Sbjct: 42 PKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQAWTALYD 101
Query: 425 VNSI 436
+ +I
Sbjct: 102 LTNI 105
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Frame = +2
Query: 236 LIICPDEGFYRGGRFIFSFKVGPNYPHEPPKVKCET-----AVYHPNIDLEGNVCLNIL- 397
LI PD+ Y G F F YP PPK T ++PN+ +G +CL+IL
Sbjct: 448 LISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILG 507
Query: 398 ------REDWKPVLTVNSIVYGLQ 451
E W P ++ ++ +Q
Sbjct: 508 TWEGRPEEKWNPYCSLMQVLVSIQ 531
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 35.9 bits (79), Expect = 0.014
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 263 YRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNVCLNIL-REDWKPVLTVNSIV 439
+ GG + S +P PP + +T ++HPN+DL G++ L +L +E W ++ ++
Sbjct: 83 WEGGEYEVSVNFH-KWPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQEHWSSETSLKKLL 141
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 35.5 bits (78), Expect = 0.018
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +2
Query: 191 CSTEFSDPDDLLNFKLIICPDEGFYRGGRFIFSFKVGPNYPHEP-PKVKCETAVYHPNID 367
C + LL +I P Y GG F + P H P+V T ++HPN+
Sbjct: 52 CIMRIDETKQLLFHVIIDGPVGSIYEGGTFFADINIQPYQNHSLIPRVCFHTFIFHPNLG 111
Query: 368 LEGNVCLNILREDWKPVLTV--NSIVYGLQ 451
GN + ++ + + L V N IV G++
Sbjct: 112 KYGNWDMRGIQWERRSNLEVLYNFIVEGMR 141
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 29.9 bits (64), Expect = 0.91
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 239 IICPDEGFYRGGRFIFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGNV 382
II P Y + + G NYP EPP V+ T V+ ++ V
Sbjct: 45 IIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTTKVHMVGVNQSNGV 92
>AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core
alpha-6-fucosyltransferase protein.
Length = 559
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 53 MIKLFSLKQQKKDEEGSARAGGSQKKASAAQLRITKDLNELNLPKTCS 196
MI L L Q + EGS Q+ +A RI K + +L PK CS
Sbjct: 144 MISLMGLSAQLEKLEGSEEERFKQR--TAITQRIFKSIEKLQNPKACS 189
>AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl
transferase protein 8 protein.
Length = 559
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 53 MIKLFSLKQQKKDEEGSARAGGSQKKASAAQLRITKDLNELNLPKTCS 196
MI L L Q + EGS Q+ +A RI K + +L PK CS
Sbjct: 144 MISLMGLSAQLEKLEGSEEERFKQR--TAITQRIFKSIEKLQNPKACS 189
>Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical
protein F25H2.8 protein.
Length = 387
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 281 IFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGN-VCLNIL-REDWKPVLTVNSIV 439
+FSF +P +PP V+ + L G +C+ +L ++ W ++ S +
Sbjct: 280 LFSFTFNEKFPCDPPFVRVVAPHINQGFVLGGGAICMELLTKQGWSSAYSIESCI 334
>AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin
conjugating enzyme UBC-25 protein.
Length = 387
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 281 IFSFKVGPNYPHEPPKVKCETAVYHPNIDLEGN-VCLNIL-REDWKPVLTVNSIV 439
+FSF +P +PP V+ + L G +C+ +L ++ W ++ S +
Sbjct: 280 LFSFTFNEKFPCDPPFVRVVAPHINQGFVLGGGAICMELLTKQGWSSAYSIESCI 334
>U67955-2|AAB07583.2| 791|Caenorhabditis elegans Hypothetical
protein C16H3.3a protein.
Length = 791
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 80 QKKDEEGSARAGGSQKKASAAQLRITKDLNELN-LPKTCSTEFSDPDD 220
+KK+ A+ +KKA AA+ + ++ +L L + + DPDD
Sbjct: 124 EKKNTPSKAKLAAMKKKADAARRKAQREAKKLEALGEKQEEDDEDPDD 171
>AY204190-1|AAO39194.1| 382|Caenorhabditis elegans nuclear receptor
NHR-106 protein.
Length = 382
Score = 26.6 bits (56), Expect = 8.4
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = -2
Query: 240 INLKLSKSSGSENS-VLQVLGRFSSFKSFVIRSCAADAFFCEPPALAEPSSSFFCCFNEK 64
+N K ++ S +S G+F KS +R C E + +P S F +
Sbjct: 33 VNTKTNRKSCKYSSNCTNFTGKFPQCKSCRMRKCIKMGMMPEKVKVMQPISQSLEIFVSR 92
Query: 63 SFIIVLTNQ*NRN*KYVKPS 4
+I+ TN ++ Y+ S
Sbjct: 93 PNLILFTNNYDKTRNYIDVS 112
>AF022978-5|AAG24181.2| 382|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 106 protein.
Length = 382
Score = 26.6 bits (56), Expect = 8.4
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = -2
Query: 240 INLKLSKSSGSENS-VLQVLGRFSSFKSFVIRSCAADAFFCEPPALAEPSSSFFCCFNEK 64
+N K ++ S +S G+F KS +R C E + +P S F +
Sbjct: 33 VNTKTNRKSCKYSSNCTNFTGKFPQCKSCRMRKCIKMGMMPEKVKVMQPISQSLEIFVSR 92
Query: 63 SFIIVLTNQ*NRN*KYVKPS 4
+I+ TN ++ Y+ S
Sbjct: 93 PNLILFTNNYDKTRNYIDVS 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,118,718
Number of Sequences: 27780
Number of extensions: 167746
Number of successful extensions: 462
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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