Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P04
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   3.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   4.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.3  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 155 TKDLNELNLPKTCSTEFSD 211
           T +LN  N P TC T+  D
Sbjct: 13  TWELNATNSPHTCRTKNGD 31



 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 113 GGSQKKASAAQLRITKDLNE 172
           GGS   A  A L+I KD+ E
Sbjct: 305 GGSSGAALIAALKIAKDIPE 324


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 53  MIKLFSLKQQKKDEEGSARAGGSQKKASAAQLRITKDLN---ELNLPKTCSTEFSDPDDL 223
           M +  ++ Q+KK+   + + GGS   AS   L     LN   ++ L K       + DDL
Sbjct: 1   MSRSINMDQEKKNNVENLKGGGSTTPASPT-LSTPPTLNLMEQILLAKIEKQNLHESDDL 59


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 164 LNELNLPKTCSTEFSDPDDLLNF 232
           L E  LPKT S    +PD  + +
Sbjct: 78  LTEEKLPKTSSNASVEPDSKVTY 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,234
Number of Sequences: 438
Number of extensions: 1913
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)