Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P03
         (487 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6GZ99 Cluster: Msp2; n=7; Anaplasma phagocytophilum|Re...    36   0.64 
UniRef50_P53971 Cluster: RING finger protein YNL023C; n=4; Sacch...    33   3.4  
UniRef50_A5Z3G2 Cluster: Putative uncharacterized protein; n=1; ...    32   6.0  

>UniRef50_Q6GZ99 Cluster: Msp2; n=7; Anaplasma phagocytophilum|Rep:
           Msp2 - Anaplasma phagocytophilum (Ehrlichia
           phagocytophila)
          Length = 365

 Score = 35.5 bits (78), Expect = 0.64
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 162 SAERERLSLYPYTAAGCNATCDRMTKKFETMEKSFTLKKT*NYNFICNII 13
           S E  +L++ PYT AG   +   +TK    ++ S+ LK   NY F+ N +
Sbjct: 260 SMELVKLNISPYTCAGIGGSVIGITKGHANLQLSYKLKLGLNYRFLSNAV 309


>UniRef50_P53971 Cluster: RING finger protein YNL023C; n=4;
           Saccharomycetales|Rep: RING finger protein YNL023C -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 965

 Score = 33.1 bits (72), Expect = 3.4
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = -2

Query: 174 SVVCSAERERLSLYPYTAAGCNATCDRMTKKFETMEKSFTLKKT*NYNFICN 19
           SV C A+ +R+S+   +   CN  C+ + K+ + ++++F +K+  N NF  N
Sbjct: 650 SVTCGAKSDRVSVTESSVLDCNEECEAL-KRLKELKEAFGIKEETN-NFTSN 699


>UniRef50_A5Z3G2 Cluster: Putative uncharacterized protein; n=1;
           Eubacterium ventriosum ATCC 27560|Rep: Putative
           uncharacterized protein - Eubacterium ventriosum ATCC
           27560
          Length = 915

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 307 SLASWFRKNHTMLLFFILPLFNYIYVYH 390
           S+  WF KN   +L F+LP+ + + VY+
Sbjct: 9   SIKDWFEKNKLYILAFVLPILSMLIVYY 36


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,416,401
Number of Sequences: 1657284
Number of extensions: 7472217
Number of successful extensions: 16492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16472
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)