Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P03
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   2.6  
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    25   6.1  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   8.0  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   8.0  

>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 226 HSFVQVFRGICTF*-NILW*LK*IKNEVSLASWFRKNHTMLLFFILPLFNYIY 381
           +  + +    C F  ++ W  K IKN V L + F  N T  +FF+  L   +Y
Sbjct: 42  YEIISIALNPCNFSKSLFWLRKKIKNSVLLKTSFDSNET--IFFLYSLHRCVY 92


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 101 AIE*RKNLRQWKKVSL*RKHKIITLFV 21
           A+E  K LR WK+ +  R+H  + LFV
Sbjct: 242 AVEDEKRLR-WKRENQLRRHNFVGLFV 267


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 177 YGGAHGSHQLTVAVIFSLIRASVPRYLYVLKYF--MVTKINKE*SFTCILV 323
           +GGA G H   +A + ++ +  + +Y  VL  +   +  +  E    C+ V
Sbjct: 481 FGGAGGQHACAIASLLNIEKIIIHKYSSVLSAYGLALAHVTHEEQMPCLSV 531


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 308 ETSFFIYFSYHKIFQNVQIPRN 243
           ET+F  +FS+  IF+N+ I  N
Sbjct: 64  ETTFPSFFSFFPIFRNIVIREN 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,448
Number of Sequences: 5004
Number of extensions: 34280
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)