Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P03
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1089 + 34019162-34019164,34019249-34019465,34019558-340197...    28   3.5  
06_01_0741 - 5510159-5510581,5510862-5511124,5511223-5511400,551...    27   8.0  
06_01_0012 + 166514-167194                                             27   8.0  

>02_05_1089 +
           34019162-34019164,34019249-34019465,34019558-34019714,
           34019935-34020071,34020387-34020490,34020593-34020688,
           34020818-34020908,34021384-34021504,34021579-34021775,
           34022605-34022705,34022778-34022833,34023689-34023778,
           34023865-34023964,34024194-34024295,34024372-34024441,
           34024696-34024850,34024944-34025068,34025126-34025144
          Length = 646

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 188 SWLASANSSSYILTHSCKCSAV 253
           SW  +A+ SS I+T SC C+ V
Sbjct: 545 SWTGTADDSSVIITASCLCTLV 566


>06_01_0741 -
           5510159-5510581,5510862-5511124,5511223-5511400,
           5511411-5511698,5511801-5511899,5511973-5512440,
           5512559-5512744,5512887-5513004,5513035-5513228
          Length = 738

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 296 RMKFHLH-PGFVKTIQCFYFLFFHFLITYMYII 391
           R ++H H P  ++ ++ + F  F FL+ + Y++
Sbjct: 16  RKRYHRHTPRQIQQLEAYAFSLFFFLLLFFYVL 48


>06_01_0012 + 166514-167194
          Length = 226

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 71  IVSNFFVILSHVALQPAAV*GXXXXXXXXAEQTTLIWRRSWLASANSSSYILTHS 235
           +++N F+I  H  L+PA            A      WR SW++ A+++     HS
Sbjct: 172 LITNQFIIALHFRLEPA------ISLQSAATMPAKTWRLSWMSPASNTLLTGFHS 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,822,351
Number of Sequences: 37544
Number of extensions: 189969
Number of successful extensions: 357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)