Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P03
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40035| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_53907| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-41)                 28   4.7  
SB_48326| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  

>SB_40035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 185 RSWLASANSSSYILTHSCKCSAVFVRFEIFYGN 283
           ++W+A ANS   ILT  C C A  ++ ++ YG+
Sbjct: 119 KAWIA-ANSDGSILTAHCNCMAGLIK-DVCYGS 149


>SB_53907| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-41)
          Length = 686

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 189 HGSHQLTVAV-IFSLIRASVPRYLYVLKYFMVTKI 290
           H ++ L +A  IFSL+ +SV RY+ VL+ F   K+
Sbjct: 433 HFAYALPIAASIFSLLLSSVDRYIAVLQPFKEIKL 467


>SB_48326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = -1

Query: 448 TLLPVMSLKIFQSSTIWIINDIHICN*KVEE*KIKALYGFYETRMQVKLHSLFILVTIKY 269
           TLL  ++L ++Q +T      I +    + E KIKAL+  ++      LH  FIL  ++ 
Sbjct: 102 TLLVFVALFVWQLATNLTRQKIFVGLDVMPEHKIKALFALFKGYRCCDLHRCFILCILQ- 160

Query: 268 FKTY 257
            KTY
Sbjct: 161 -KTY 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,002,815
Number of Sequences: 59808
Number of extensions: 226156
Number of successful extensions: 507
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)