Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P03
         (487 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02320.1 68417.m00316 pectinesterase family protein contains ...    29   1.7  
At5g64500.1 68418.m08103 membrane protein-related contains weak ...    28   3.8  
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate...    27   5.1  
At2g38100.1 68415.m04677 proton-dependent oligopeptide transport...    27   5.1  
At2g13800.1 68415.m01523 leucine-rich repeat family protein / pr...    27   5.1  
At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr...    27   5.1  
At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr...    27   5.1  
At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kin...    27   5.1  
At4g31980.1 68417.m04547 expressed protein contains Pfam profile...    27   6.7  
At4g02300.1 68417.m00311 pectinesterase family protein contains ...    27   8.9  

>At4g02320.1 68417.m00316 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 518

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 317 DASETSFFIYFSYHKIFQNVQIPR 246
           ++SET F IY    + F+N++IPR
Sbjct: 230 NSSETRFVIYIKCGEYFENIEIPR 253


>At5g64500.1 68418.m08103 membrane protein-related contains weak
           similarity to spinster type IV (GI:12003976) [Drosophila
           melanogaster]
          Length = 484

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 292 IKNEVSLASWFRKNHTMLLFFILPLFNYI 378
           IK+ +S  SWF     + +F ++ L NYI
Sbjct: 23  IKDPISEPSWFTPKKLLFVFCVVNLINYI 51


>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
           receptor kinase 1 (BAK1) / somatic embryogenesis
           receptor-like kinase 3 (SERK3) identical to SP|Q94F62
           BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
           1 precursor (EC 2.7.1.37) (BRI1-associated receptor
           kinase 1) (Somatic embryogenesis receptor-like kinase 3)
           {Arabidopsis thaliana}; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain;
           identical to cDNA somatic embryogenesis receptor-like
           kinase 3 (SERK3) GI:14573458
          Length = 615

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 165 CSAERERLSLYPYTAAGCNATCDR 94
           C    ERL +YPY A G  A+C R
Sbjct: 353 CMTPTERLLVYPYMANGSVASCLR 376


>At2g38100.1 68415.m04677 proton-dependent oligopeptide transport
           (POT) family protein low similarity to SP|P46032 Peptide
           transporter PTR2-B (Histidine transporting protein)
           {Arabidopsis thaliana}; contains Pfam profile PF00854:
           POT family
          Length = 521

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 323 FVKTIQCFYFLFFHFLITYMYIINDPYSGA 412
           +V T+ C + L  +F++TY Y + +   GA
Sbjct: 480 WVITVFCMFNLLLYFIVTYRYTVCNKKDGA 509


>At2g13800.1 68415.m01523 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 601

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 165 CSAERERLSLYPYTAAGCNATCDR 94
           C    ERL +YPY A G  A+C R
Sbjct: 339 CMTPTERLLVYPYMANGSVASCLR 362


>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
           protein kinase family protein 
          Length = 620

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 165 CSAERERLSLYPYTAAGCNATCDR 94
           C    ERL +YPY A G  A+C R
Sbjct: 358 CMTPTERLLVYPYMANGSVASCLR 381


>At1g71830.1 68414.m08301 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 625

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 165 CSAERERLSLYPYTAAGCNATCDR 94
           C    ERL +YPY A G  A+C R
Sbjct: 366 CMTPTERLLVYPYMANGSVASCLR 389


>At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kinase
           2 (SERK2) nearly identical to somatic embryogenesis
           receptor-like kinase 2 [Arabidopsis thaliana]
           GI:14573457; contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain; identical to
           cDNA somatic embryogenesis receptor-like kinase 2
           (SERK2) GI:14573456
          Length = 628

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 165 CSAERERLSLYPYTAAGCNATCDR 94
           C    ERL +YPY A G  A+C R
Sbjct: 369 CMTPTERLLVYPYMANGSVASCLR 392


>At4g31980.1 68417.m04547 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 680

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/45 (22%), Positives = 19/45 (42%)
 Frame = -2

Query: 135 YPYTAAGCNATCDRMTKKFETMEKSFTLKKT*NYNFICNIIIPSC 1
           Y      CN  C+ ++ K         + +     F+CN ++P+C
Sbjct: 109 YHLITRNCNHFCNHVSLKLTHKSIPSWVNRLARLGFLCNCVLPAC 153


>At4g02300.1 68417.m00311 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 532

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 311 SETSFFIYFSYHKIFQNVQIPR 246
           SET F IY    + F+NV++P+
Sbjct: 246 SETRFIIYIKGGEYFENVELPK 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,088,176
Number of Sequences: 28952
Number of extensions: 162191
Number of successful extensions: 323
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)