Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P02
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 243 8e-66
SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces pombe... 27 1.3
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 1.3
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 27 1.7
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 3.0
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 26 3.0
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 4.0
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 25 5.2
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 5.2
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 5.2
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 25 5.2
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 6.9
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 25 6.9
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 24 9.1
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 24 9.1
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 243 bits (595), Expect = 8e-66
Identities = 111/139 (79%), Positives = 125/139 (89%)
Frame = +3
Query: 6 RKKTIKEKYTEDEELNKTKPIWTRNADDITQEEYGDFYKSLTNDWEDHLAVKHFSVEGQL 185
+ K +KE TE EELNKTKPIWTRN ++T+EEY FYKSLTNDWEDHLAVKHFSVEGQL
Sbjct: 251 KTKKVKETTTETEELNKTKPIWTRNPSEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQL 310
Query: 186 EFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLP 365
EFRA+LFVPRRAP DLFE K++KNNIKLYVRRVFI D+CE+LIPE+L FI+GVVDSEDLP
Sbjct: 311 EFRAILFVPRRAPMDLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLP 370
Query: 366 LNISREMLQQNKILKVI*K 422
LN+SREMLQQNKI+KVI K
Sbjct: 371 LNLSREMLQQNKIMKVIRK 389
>SPAC22A12.02c |mug103||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 124
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Frame = +3
Query: 345 VDSEDLPLNISREMLQQN--KILKVI*KESG 431
++SED+PL+ R+ML++ K K++ KE G
Sbjct: 87 INSEDMPLSDDRDMLKERHVKSRKLLLKEKG 117
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.1 bits (57), Expect = 1.3
Identities = 21/87 (24%), Positives = 40/87 (45%)
Frame = +3
Query: 90 ITQEEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENKKRKNNIKL 269
I + ++ + L D LAVK + G L L + DL N+K +K
Sbjct: 924 IDRRQWSFEHPLLQFDLPHDLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGPTVKK 983
Query: 270 YVRRVFIMDNCEDLIPEYLNFIRGVVD 350
++ ++ +++ DL+P N +R V++
Sbjct: 984 FISKLPLLNINVDLLPLTKNVLRLVLN 1010
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 1.7
Identities = 11/15 (73%), Positives = 13/15 (86%), Gaps = 1/15 (6%)
Frame = -1
Query: 42 HLQCIFPL-SFFSSC 1
HLQC+ PL SFF+SC
Sbjct: 195 HLQCLSPLTSFFTSC 209
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 3.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = +3
Query: 231 LFENKKRKNNIK-----LYVRRVFIMDNCEDLIPEYLNFIR 338
L EN KNN+ L ++ I++ CE +I + LNF++
Sbjct: 1144 LQENTSSKNNLLQKEWILITKKKVILEQCEYVILDILNFLK 1184
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 204 RVKHGIPTDLLRRSVLQQDDPPSH 133
R HGIP DLL R ++ P SH
Sbjct: 335 RSPHGIPVDLLDRMLIISTLPYSH 358
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 4.0
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +3
Query: 150 LAVKHFSVEG-QLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYL 326
+A+ F +E F + + +A L ++K N K FI++ + P +
Sbjct: 238 IALDKFRIEALHANFSVSISLRNKAIQHLLKSKIAANTDKAINCIEFILEAPPSMQPRLI 297
Query: 327 NFIRGVVDSEDLPLNISREMLQQNKILKVI 416
F R VVD D + + KIL ++
Sbjct: 298 QFTRWVVDKADPNFLKPKAAMILEKILSIL 327
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 5.2
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -1
Query: 195 HGIPTDLLRRSVLQQDDPPSHWSEI 121
HGIPTDLL R ++ + P S SEI
Sbjct: 349 HGIPTDLLDRLLIVRTLPYSE-SEI 372
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 184 WNSVLYSLYLAGLHLIYLKIKNARTTLNFMSEG 282
W +++Y L +L+Y K N + F++ G
Sbjct: 617 WKTIIYKENLTAENLLYPKCPNETAIIGFVTTG 649
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 243 KKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNIS 377
KKR+ + Y RR F ++ E I Y N V+ + +PL+I+
Sbjct: 158 KKRRKKGQGYARRYFTLNMVEGTISYYANENSSVMRGK-IPLSIA 201
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 18 IKEKYTEDEELNKTKPIWTRNADDITQEEYGDFYKSLTNDWEDHLAVKH--FSVEGQLE 188
++E ++DE L+ I R ++ D Y + NDWE L+ + +S++G+ E
Sbjct: 708 LQEINSQDEFLSTVSIILYRRLS--RHQDALDVYLKILNDWEGALSYCNSVYSIDGETE 764
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 24.6 bits (51), Expect = 6.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = +3
Query: 63 PIWTRNADDITQEEYGDFYKSLTNDWE 143
P+W AD + Q D + + DW+
Sbjct: 1123 PVWNEEADIVVQNRVLDVLELVCYDWD 1149
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 24.6 bits (51), Expect = 6.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 240 FQIDQMEPCEVQRVKHG 190
F+I Q+ C+V R+KHG
Sbjct: 464 FKISQVLGCDVYRLKHG 480
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 208 YLAGLHLIYLKIKNARTTLNFM 273
YL GLH +Y K K LN++
Sbjct: 97 YLLGLHRVYKKKKGKIEELNYL 118
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 350 VDYTPDEVQVFWDKVFTVVHDKYPSDIKFNVV 255
+DY DE + W F DK+P D N++
Sbjct: 109 LDYL-DEYLIHWPVSFKTGEDKFPKDKDGNLI 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,554
Number of Sequences: 5004
Number of extensions: 36646
Number of successful extensions: 129
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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