Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0001_P02
(444 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 269 6e-73
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 164 3e-41
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 88 4e-18
SB_36664| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43
SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53) 30 0.99
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 4.0
SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_52448| Best HMM Match : X (HMM E-Value=1.7) 27 5.3
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_43190| Best HMM Match : GKAP (HMM E-Value=1.6e-09) 27 9.2
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 269 bits (660), Expect = 6e-73
Identities = 125/146 (85%), Positives = 137/146 (93%)
Frame = +3
Query: 6 RKKTIKEKYTEDEELNKTKPIWTRNADDITQEEYGDFYKSLTNDWEDHLAVKHFSVEGQL 185
+KKTIKEKYTE EELNKTKPIW RNAD+IT EEYG+FYKSLTNDWE+HLAVKHFSVEGQL
Sbjct: 207 KKKTIKEKYTEMEELNKTKPIWMRNADEITTEEYGEFYKSLTNDWEEHLAVKHFSVEGQL 266
Query: 186 EFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLP 365
EFRALLFVP+RAPFDLFE++K++NNIKLYVRRVFIMDNCEDLIPEYL FI+GVVDSEDLP
Sbjct: 267 EFRALLFVPKRAPFDLFESRKKRNNIKLYVRRVFIMDNCEDLIPEYLGFIKGVVDSEDLP 326
Query: 366 LNISREMLQQNKILKVI*KESGKEML 443
LNISREMLQQNKILKVI K K+ +
Sbjct: 327 LNISREMLQQNKILKVIRKNLVKKCM 352
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 164 bits (398), Expect = 3e-41
Identities = 78/147 (53%), Positives = 110/147 (74%), Gaps = 1/147 (0%)
Frame = +3
Query: 6 RKKTIKEKYTEDEELNKTKPIWTRNADDITQEEYGDFYKSLTNDWEDHLAVKHFSVEGQL 185
+ K +++ + E+LN KPIWTR +I +EY +FYKS T + ED LA HF EG++
Sbjct: 307 KTKKVEKTVWDWEQLNTNKPIWTRKPKEIKDDEYNEFYKSFTKESEDPLAKIHFVAEGEV 366
Query: 186 EFRALLFVPRRAPFDLFENK-KRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDL 362
FR++LFVP+ AP +LF + K+ + IKL+VRRVFI DN E+++P+YL+FIRGVVDS+DL
Sbjct: 367 TFRSILFVPKAAPSNLFSDYGKKMDAIKLFVRRVFITDNFEEMMPKYLSFIRGVVDSDDL 426
Query: 363 PLNISREMLQQNKILKVI*KESGKEML 443
PLN+SRE LQQ+K+LKVI K+ ++ L
Sbjct: 427 PLNVSREQLQQHKLLKVIKKKLVRKAL 453
>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
Length = 739
Score = 87.8 bits (208), Expect = 4e-18
Identities = 38/110 (34%), Positives = 65/110 (59%)
Frame = +3
Query: 48 LNKTKPIWTRNADDITQEEYGDFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPF 227
+N +P+WT DI++E++ +FY+ L+ ++ H+ + L R++ + P P
Sbjct: 270 INTIQPLWTLEPRDISKEQHDEFYQFLSKGYDKPRYYLHYKTDAPLNIRSIFYFPETLP- 328
Query: 228 DLFENKKRKNNIKLYVRRVFIMDNCEDLIPEYLNFIRGVVDSEDLPLNIS 377
+F ++ ++ I LY RRV I E ++P+ FIR VVDSED+PLN+S
Sbjct: 329 QMFNMQQMESGISLYSRRVLIQAKAEKMLPQRFRFIRSVVDSEDIPLNLS 378
Score = 52.8 bits (121), Expect = 1e-07
Identities = 21/34 (61%), Positives = 30/34 (88%)
Frame = +3
Query: 309 LIPEYLNFIRGVVDSEDLPLNISREMLQQNKILK 410
++P +L FIRGVVDSED+PLN+SRE+LQ + ++K
Sbjct: 399 VLPRWLRFIRGVVDSEDIPLNLSRELLQDSALIK 432
>SB_36664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 31.1 bits (67), Expect = 0.43
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +3
Query: 9 KKTIKEKYTEDEELNKTKPIWTRNADDITQEEYGDFYKSLTNDWED 146
KK +K+K + LNK KP++ N + T EEY D Y L D+ED
Sbjct: 446 KKKLKKKSKFAKALNKNKPLFDPN--EKTFEEYFDEYYKL--DYED 487
>SB_7618| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.53)
Length = 319
Score = 29.9 bits (64), Expect = 0.99
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 75 RNADDITQEEYGDFYKSLTNDWEDHLAVK----HFSVEGQL 185
RN DD T +GD+ K ND HL K H+ VEG +
Sbjct: 279 RNTDDDTDVWFGDWEKGQINDILSHLGNKVKSSHYIVEGTI 319
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 137 VIGQRFVEISVL-LLCDVIGVSSPDRFSL 54
VIGQ+ +++S+ L CD+ + DRFSL
Sbjct: 4416 VIGQKHLKLSIRPLSCDMYAIKWEDRFSL 4444
>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 2532
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +3
Query: 258 NIKLYVRRVFIMDN---CEDLIPEYLNFIRGVVDSEDLPLNISREMLQQNKILKVI*KES 428
N KL V+++ + + CE L+ E + + +++ + +E+ +QNK++ V+ K
Sbjct: 1142 NEKLAVQKIAVTEKSEACEKLLVEIQRATQQANEKKEMAIGKKKEIAEQNKVI-VVEKTE 1200
Query: 429 GKEML 443
+E L
Sbjct: 1201 AEEAL 1205
>SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 980
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 252 KNNIKLYVRRVFIMDNCEDLIPEYLNFIR-GVVDSEDLPLNISREMLQ 392
+N ++Y + M+N DL+ + + V D +DLP N S+++ +
Sbjct: 199 ENGPRVYTLNISAMNNHTDLMLQSFGVVTINVTDVDDLPANFSQKLYE 246
>SB_52448| Best HMM Match : X (HMM E-Value=1.7)
Length = 549
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -2
Query: 155 SKMILPVIGQRFVEISVLLLCDVIGVSSPD 66
SK++L ++ +FV+++ LL ++ +S PD
Sbjct: 107 SKVVLQIVSNKFVDLAELLPANLSTMSEPD 136
>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 135 DWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFENKKRKNNIKLYVRRVFI 290
D E H+ + + V + R L VP F + NK+R N + YV +F+
Sbjct: 373 DEERHVVLPYTIVRNTMG-RTLHTVPAHKTFKMVYNKRRGANKEPYVASIFV 423
>SB_43190| Best HMM Match : GKAP (HMM E-Value=1.6e-09)
Length = 816
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 341 TPDEVQVFWDKVFTVVHDKY 282
TP ++Q FWD ++ V D Y
Sbjct: 439 TPSDLQGFWDMIYFQVEDVY 458
>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 158 YSKMILPVIGQRFVEISVLLLCDV-IGVSSPD 66
Y ++++P RF+ S+ LC++ +G PD
Sbjct: 327 YIRLVVPSSAARFIAASLTALCNITVGKGDPD 358
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,109,148
Number of Sequences: 59808
Number of extensions: 273908
Number of successful extensions: 760
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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