Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P01
         (221 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    27   0.44 
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    27   0.44 
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    23   4.1  
SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyc...    23   5.5  
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    22   9.5  

>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 163 ACDNNSKCCVDILYRYIDIKTVDCIFLRNR 74
           AC NN++C ++I   Y    ++D I+ R R
Sbjct: 143 ACYNNAECQLNIAMEYCGAGSLDAIYKRVR 172


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 99  TVLMSIYRYKISTQHFELL 155
           T L+ IY Y+IS  H ELL
Sbjct: 382 TKLLEIYSYRISAHHVELL 400


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 219 NELVINYIDTRRQ*NQPLVRAITTQNAVSIFCIDI 115
           N  +  Y++TR   N+PL  A T +N++ +  I +
Sbjct: 386 NAFLPYYLETRGNANEPLSVAKTYRNSLIVSAIGV 420


>SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 120 RYKISTQHFELLSHALAVDFIG 185
           RY++ +Q F L + A +V FIG
Sbjct: 72  RYRVMSQGFTLAALAFSVLFIG 93


>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = -2

Query: 181 MKSTASACDNNSKCCVDILYRYIDIKTVDCIFLRNRINYLLKMIL 47
           M+      D+ ++  ++I+Y+ ++      +F +NRI   LK+ L
Sbjct: 268 MRENVVMRDSETREAINIVYKDVNEWPKQLLFSQNRILEKLKIFL 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,591
Number of Sequences: 5004
Number of extensions: 8984
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)