Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P01
         (221 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)                  29   0.79 
SB_40066| Best HMM Match : UBX (HMM E-Value=1.1e-08)                   26   4.2  
SB_44678| Best HMM Match : MoCF_biosynth (HMM E-Value=1.5e-19)         26   4.2  
SB_24691| Best HMM Match : PAN (HMM E-Value=9.6e-10)                   25   9.8  

>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
          Length = 401

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 202 LYRYATPMKSTASACDNNSKCCVDILYR 119
           L R ATP+ ++   C    +CCV + YR
Sbjct: 198 LERIATPVTTSKLRCSTTQECCVRVDYR 225


>SB_40066| Best HMM Match : UBX (HMM E-Value=1.1e-08)
          Length = 566

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 190 ATPMKSTASACDNNSKCCVDILYRYID 110
           A  M  T +      K CVDIL RYID
Sbjct: 139 AAQMIQTLNRDKERVKACVDILCRYID 165


>SB_44678| Best HMM Match : MoCF_biosynth (HMM E-Value=1.5e-19)
          Length = 348

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -2

Query: 157 DNN--SKCCVDILYRYIDIKTVDCIFLRN 77
           DNN  +K  VD++ RY DI  VD I   N
Sbjct: 129 DNNDDNKPYVDVVKRYYDINLVDLISFNN 157


>SB_24691| Best HMM Match : PAN (HMM E-Value=9.6e-10)
          Length = 359

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 130 ILYRYIDIKTVDCIFLRNRINYL 62
           ++ + ID+K V CIF+R+   Y+
Sbjct: 210 VISKTIDLKPVTCIFIRSTPYYI 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,670,122
Number of Sequences: 59808
Number of extensions: 64143
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 16,821,457
effective HSP length: 51
effective length of database: 13,771,249
effective search space used: 302967478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)