Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P01
         (221 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine rece...    26   4.2  
Z78539-2|CAB01729.2|  410|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z71181-7|CAA94900.2|  485|Caenorhabditis elegans Hypothetical pr...    25   7.3  
L17337-1|AAP68928.1|  593|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AF016415-5|AAW88414.1|  305|Caenorhabditis elegans Serpentine re...    25   7.3  
U58752-3|AAB00666.1|  367|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 11 protein.
          Length = 350

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 136 VDILYRYIDIKTVDCIFLRNRINYLLKMILFKSTFILYLTI 14
           + +++  I   T+ C FLRN  N +  +I   S   L L +
Sbjct: 142 ISLIFLLITFGTISCYFLRNASNTIYVVICLISLNALALVV 182


>Z78539-2|CAB01729.2|  410|Caenorhabditis elegans Hypothetical
           protein C31E10.3 protein.
          Length = 410

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 160 CDNNSKCCVDILYRYIDIKTVDCI 89
           C+NN+    D++Y + ++K   CI
Sbjct: 154 CENNNYAAFDVIYVHKNLKDCGCI 177


>Z71181-7|CAA94900.2|  485|Caenorhabditis elegans Hypothetical
           protein K07C5.7 protein.
          Length = 485

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 93  QSTVLMSIYRYKISTQHFELLSHALAVD 176
           Q+ +LMS+   K++ Q+FEL      VD
Sbjct: 305 QTKMLMSLQNLKLNPQYFELSRFDFVVD 332


>L17337-1|AAP68928.1|  593|Caenorhabditis elegans Hypothetical
           protein ZK686.2 protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 157 DNNSKCCVDILYRYIDIKTVDCIFLRN 77
           +N    C D+L R  D+  VDC+   N
Sbjct: 449 ENRVLICSDVLARGTDLNKVDCVINYN 475


>AF016415-5|AAW88414.1|  305|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 30 protein.
          Length = 305

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 169 ASACDNNSKCCVDILYRYIDIKTVD-CIFL 83
           A A +  +  CV +LYR I +K  + CIFL
Sbjct: 110 AIAVERATAVCVPLLYRTITLKIPNFCIFL 139


>U58752-3|AAB00666.1|  367|Caenorhabditis elegans Hypothetical
           protein B0218.5 protein.
          Length = 367

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -2

Query: 100 VDCIFLRNRINYLLKMILFKSTFILYLTIASCR 2
           +D   ++NR N+++  ++ K+ + L +  A CR
Sbjct: 86  IDQAAVKNRFNFIVMKLIGKNLWDLRMDTAECR 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,497,531
Number of Sequences: 27780
Number of extensions: 48565
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)