Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0001_P01
         (221 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p...    27   2.2  
At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containi...    25   5.1  
At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containi...    25   9.0  
At1g76350.1 68414.m08871 RWP-RK domain-containing protein simila...    25   9.0  

>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
           protease, putative similar to cysteine proteinase RD21A
           precursor (thiol protease) GI:435619, SP:P43297 from
           [Arabidopsis thaliana]
          Length = 463

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 169 ASACDNNSKCCVDILYRYIDIKTVDCIFLRN 77
           A+ CD+NS CC    Y   D+    C+  +N
Sbjct: 409 ATCCDDNSSCCPH-EYPVCDVNRGTCLMSKN 438


>At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containing
           protein  and genefinder
          Length = 559

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 109 CRYIDTKYR-HSILSCYRTH*RLISLASRIDIINY 210
           C  I+  +  H  +SC  TH +   + S +DI+N+
Sbjct: 498 CSSIEVDFEVHEFISCGGTHPKSAEIYSLLDILNW 532


>At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containing
           protein strong similarity to PCMP-H2 [Arabidopsis
           thaliana] GI:5050911; contains Pfam profile PF01535: PPR
           repeat
          Length = 783

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 109 CRYIDTKYR-HSILSCYRTH*RLISLASRID 198
           C +++ K + HS +S  R H R++ + S++D
Sbjct: 635 CSWVEEKGKVHSFMSEDRRHPRMVEIYSKVD 665


>At1g76350.1 68414.m08871 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 808

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 199 YRYATPMKSTASACDNNSKC 140
           Y ++ P KS  S+C ++S C
Sbjct: 652 YSHSPPAKSPGSSCSHSSSC 671


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,202
Number of Sequences: 28952
Number of extensions: 39929
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 12,070,560
effective HSP length: 53
effective length of database: 10,536,104
effective search space used: 210722080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)